Minimal specifications for non-human primate MRI: Challenges in standardizing and harmonizing data collection

A resource for the detailed 3D mapping of white matter pathways in the marmoset brain

(2020) Cirong Liu et al.   NATURE NEUROSCIENCE

B0-field dependence of MRI T1 relaxation in human brain

(2020) Yicun Wang et al.   NEUROIMAGE

Accelerating the Evolution of Nonhuman Primate Neuroimaging

(2020) Michael Milham et al.   NEURON

Variability in the analysis of a single neuroimaging dataset by many teams

(2020) Rotem Botvinik-Nezer et al.   NATURE

Analysis of task-based functional MRI data preprocessed with fMRIPrep

(2020) Oscar Esteban et al.   Nature Protocols

XTRACT - Standardised protocols for automated tractography in the human and macaque brain

(2020) Shaun Warrington et al.   NEUROIMAGE

Towards HCP-Style macaque connectomes: 24-Channel 3T multi-array coil, MRI sequences and preprocessing

(2020) Joonas A. Autio et al.   NEUROIMAGE

Safety of Off‐Label Use of Ferumoxtyol as a Contrast Agent for MRI : A Systematic Review and Meta‐Analysis of Adverse Events

(2020) Faraz Ahmad et al.   JOURNAL OF MAGNETIC RESONANCE IMAGING

Ultra-high field (10.5 T) resting state fMRI in the macaque

(2020) Essa Yacoub et al.   NEUROIMAGE

Effects of MP2RAGE B1+ sensitivity on inter-site T1 reproducibility and hippocampal morphometry at 7T

(2020) Roy A.M. Haast et al.   NEUROIMAGE

Submillimeter fMRI reveals a layout of dorsal visual cortex in macaques, remarkably similar to New World monkeys

(2019) Qi Zhu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Harmonization of pipeline for preclinical multicenter MRI biomarker discovery in a rat model of post-traumatic epileptogenesis

(2019) Riikka Immonen et al.   EPILEPSY RESEARCH

Integrated radiofrequency array and animal holder design for minimizing head motion during awake marmoset functional magnetic resonance imaging

(2019) David J. Schaeffer et al.   NEUROIMAGE

Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits

(2019) Bingxin Zhao et al.   NATURE GENETICS

Image processing and analysis methods for the Adolescent Brain Cognitive Development Study

(2019) Donald J. Hagler et al.   NEUROIMAGE

A 16-channel AC/DC array coil for anesthetized monkey whole-brain imaging at 7T

(2019) Yang Gao et al.   NEUROIMAGE

Correction of respiratory artifacts in MRI head motion estimates

(2019) Damien A. Fair et al.   NEUROIMAGE

Cerebral cortical folding, parcellation, and connectivity in humans, nonhuman primates, and mice

(2019) David C. Van Essen et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The impact of B1+ correction on MP2RAGE cortical T1 and apparent cortical thickness at 7T

(2018) Roy A.M. Haast et al.   HUMAN BRAIN MAPPING

Statistical harmonization corrects site effects in functional connectivity measurements from multi-site fMRI data

(2018) Meichen Yu et al.   HUMAN BRAIN MAPPING

Susceptibility-induced distortion that varies due to motion: Correction in diffusion MR without acquiring additional data

(2018) Jesper L.R. Andersson et al.   NEUROIMAGE

Neurite imaging reveals microstructural variations in human cerebral cortical gray matter

(2018) Hikaru Fukutomi et al.   NEUROIMAGE

Impacts of simultaneous multislice acquisition on sensitivity and specificity in fMRI

(2018) Benjamin B. Risk et al.   NEUROIMAGE

Harmonization of cortical thickness measurements across scanners and sites

(2018) Jean-Philippe Fortin et al.   NEUROIMAGE

Concentric radiofrequency arrays to increase the statistical power of resting-state maps in monkeys

(2018) Kyle M. Gilbert et al.   NEUROIMAGE

Multimodal surface matching with higher-order smoothness constraints

(2018) Emma C. Robinson et al.   NEUROIMAGE

Functional connectivity under six anesthesia protocols and the awake condition in rat brain

(2018) Jaakko Paasonen et al.   NEUROIMAGE

Quantitative assessment of prefrontal cortex in humans relative to nonhuman primates

(2018) Chad J. Donahue et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Delineating the Macroscale Areal Organization of the Macaque Cortex In Vivo

(2018) Ting Xu et al.   Cell Reports

The Adolescent Brain Cognitive Development (ABCD) study: Imaging acquisition across 21 sites

(2018) B.J. Casey et al.   Developmental Cognitive Neuroscience

Using temporal ICA to selectively remove global noise while preserving global signal in functional MRI data

(2018) Matthew F. Glasser et al.   NEUROIMAGE

An Open Resource for Non-human Primate Imaging

(2018) Michael P. Milham et al.   NEURON

The Blind Men and the Elephant: The Quest for Open Data Repositories

(2018) Wim Vanduffel   NEURON

Using GPUs to accelerate computational diffusion MRI: From microstructure estimation to tractography and connectomes

(2018) Moises Hernandez-Fernandez et al.   NEUROIMAGE

Nonhuman Primates and Translational Research: Progress, Opportunities, and Challenges

(2017) John D Harding   ILAR JOURNAL

Best practices in data analysis and sharing in neuroimaging using MRI

(2017) Thomas E Nichols et al.   NATURE NEUROSCIENCE

Scanning the horizon: towards transparent and reproducible neuroimaging research

(2017) Russell A. Poldrack et al.   NATURE REVIEWS NEUROSCIENCE

Studying cyto and myeloarchitecture of the human cortex at ultra-high field with quantitative imaging: R 1 , R 2 * and magnetic susceptibility

(2017) José P. Marques et al.   NEUROIMAGE

Harmonization of multi-site diffusion tensor imaging data

(2017) Jean-Philippe Fortin et al.   NEUROIMAGE

Hand classification of fMRI ICA noise components

(2017) Ludovica Griffanti et al.   NEUROIMAGE

Tradeoffs in pushing the spatial resolution of fMRI for the 7T Human Connectome Project

(2017) An T. Vu et al.   NEUROIMAGE

Functional Subpopulations of Neurons in a Macaque Face Patch Revealed by Single-Unit fMRI Mapping

(2017) Soo Hyun Park et al.   NEURON

Causal neural network of metamemory for retrospection in primates

(2017) Kentaro Miyamoto et al.   SCIENCE

Two areas for familiar face recognition in the primate brain

(2017) Sofia M. Landi et al.   SCIENCE

Quantitative assessment of the susceptibility artefact and its interaction with motion in diffusion MRI

(2017) Mark S. Graham et al.   PLoS One

Anatomical and functional neuroimaging in awake, behaving marmosets

(2016) Afonso C. Silva   Developmental Neurobiology

Using Diffusion Tractography to Predict Cortical Connection Strength and Distance: A Quantitative Comparison with Tracers in the Monkey

(2016) Chad J. Donahue et al.   JOURNAL OF NEUROSCIENCE

1,500 scientists lift the lid on reproducibility

(2016) Monya Baker   NATURE

A multi-modal parcellation of human cerebral cortex

(2016) Matthew F. Glasser et al.   NATURE

The Human Connectome Project's neuroimaging approach

(2016) Matthew F Glasser et al.   NATURE NEUROSCIENCE

Multimodal population brain imaging in the UK Biobank prospective epidemiological study

(2016) Karla L Miller et al.   NATURE NEUROSCIENCE

Optimized parallel transmit and receive radiofrequency coil for ultrahigh-field MRI of monkeys

(2016) Kyle M. Gilbert et al.   NEUROIMAGE

Cluster failure: Why fMRI inferences for spatial extent have inflated false-positive rates

(2016) Anders Eklund et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Signal-to-noise ratio and MR tissue parameters in human brain imaging at 3, 7, and 9.4 tesla using current receive coil arrays

(2015) Rolf Pohmann et al.   MAGNETIC RESONANCE IN MEDICINE

Reducing sensitivity losses due to respiration and motion in accelerated echo planar imaging by reordering the autocalibration data acquisition

(2015) Jonathan R. Polimeni et al.   MAGNETIC RESONANCE IN MEDICINE

A positive-negative mode of population covariation links brain connectivity, demographics and behavior

(2015) Stephen M Smith et al.   NATURE NEUROSCIENCE

Functional System and Areal Organization of a Highly Sampled Individual Human Brain

(2015) Timothy O. Laumann et al.   NEURON

ICA-based artifact removal diminishes scan site differences in multi-center resting-state fMRI

(2015) Rogier A. Feis et al.   Frontiers in Neuroscience

Parenchymal Spin-Lock fMRI Signals Associated with Cortical Spreading Depression

(2014) Joonas A Autio et al.   JOURNAL OF CEREBRAL BLOOD FLOW AND METABOLISM

Automatic denoising of functional MRI data: Combining independent component analysis and hierarchical fusion of classifiers

(2014) Gholamreza Salimi-Khorshidi et al.   NEUROIMAGE

ICA-based artefact removal and accelerated fMRI acquisition for improved resting state network imaging

(2014) Ludovica Griffanti et al.   NEUROIMAGE

Permutation inference for the general linear model

(2014) Anderson M. Winkler et al.   NEUROIMAGE

Monkey Cortex through fMRI Glasses

(2014) Wim Vanduffel et al.   NEURON

An open science resource for establishing reliability and reproducibility in functional connectomics

(2014) Xi-Nian Zuo et al.   Scientific Data

Large-Scale Brain Networks in the Awake, Truly Resting Marmoset Monkey

(2013) A. M. Belcher et al.   JOURNAL OF NEUROSCIENCE

Interslice leakage artifact reduction technique for simultaneous multislice acquisitions

(2013) Stephen F. Cauley et al.   MAGNETIC RESONANCE IN MEDICINE

The effect of scan length on the reliability of resting-state fMRI connectivity estimates

(2013) Rasmus M. Birn et al.   NEUROIMAGE

Evaluation of slice accelerations using multiband echo planar imaging at 3T

(2013) Junqian Xu et al.   NEUROIMAGE

The WU-Minn Human Connectome Project: An overview

(2013) David C. Van Essen et al.   NEUROIMAGE

The minimal preprocessing pipelines for the Human Connectome Project

(2013) Matthew F. Glasser et al.   NEUROIMAGE

Advances in diffusion MRI acquisition and processing in the Human Connectome Project

(2013) Stamatios N. Sotiropoulos et al.   NEUROIMAGE

Pushing spatial and temporal resolution for functional and diffusion MRI in the Human Connectome Project

(2013) Kamil Uğurbil et al.   NEUROIMAGE

Methods to detect, characterize, and remove motion artifact in resting state fMRI

(2013) Jonathan D. Power et al.   NEUROIMAGE

A 22-channel receive array with Helmholtz transmit coil for anesthetized macaque MRI at 3 T

(2013) Thomas Janssens et al.   NMR IN BIOMEDICINE

A Weighted and Directed Interareal Connectivity Matrix for Macaque Cerebral Cortex

(2012) N. T. Markov et al.   CEREBRAL CORTEX

Phase informed model for motion and susceptibility

(2012) Chloe Hutton et al.   HUMAN BRAIN MAPPING

MRI Assessment of Hepatic Iron Clearance Rates After USPIO Administration in Healthy Adults

(2012) Pippa Storey et al.   INVESTIGATIVE RADIOLOGY

Anesthesia and the Quantitative Evaluation of Neurovascular Coupling

(2012) Kazuto Masamoto et al.   JOURNAL OF CEREBRAL BLOOD FLOW AND METABOLISM

Raise standards for preclinical cancer research

(2012) C. Glenn Begley et al.   NATURE

Data-driven analysis of analogous brain networks in monkeys and humans during natural vision

(2012) Dante Mantini et al.   NEUROIMAGE

An implanted 8-channel array coil for high-resolution macaque MRI at 3T

(2012) T. Janssens et al.   NEUROIMAGE

Improving diffusion MRI using simultaneous multi-slice echo planar imaging

(2012) K. Setsompop et al.   NEUROIMAGE

The Human Connectome Project: A data acquisition perspective

(2012) D.C. Van Essen et al.   NEUROIMAGE

FreeSurfer

(2012) Bruce Fischl   NEUROIMAGE

Cortical thickness determination of the human brain using high resolution 3T and 7T MRI data

(2012) Falk Lüsebrink et al.   NEUROIMAGE

Functional imaging reveals rapid reorganization of cortical activity after parietal inactivation in monkeys

(2012) M. Wilke et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Mapping Human Cortical Areas In Vivo Based on Myelin Content as Revealed by T1- and T2-Weighted MRI

(2011) M. F. Glasser et al.   JOURNAL OF NEUROSCIENCE

Believe it or not: how much can we rely on published data on potential drug targets?

(2011) Florian Prinz et al.   NATURE REVIEWS DRUG DISCOVERY

Spurious but systematic correlations in functional connectivity MRI networks arise from subject motion

(2011) Jonathan D. Power et al.   NEUROIMAGE

Multiband multislice GE-EPI at 7 tesla, with 16-fold acceleration using partial parallel imaging with application to high spatial and temporal whole-brain fMRI

(2010) Steen Moeller et al.   MAGNETIC RESONANCE IN MEDICINE

Multiplexed Echo Planar Imaging for Sub-Second Whole Brain FMRI and Fast Diffusion Imaging

(2010) David A. Feinberg et al.   PLoS One

Space representation for eye movements is more contralateral in monkeys than in humans

(2010) Igor Kagan et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Functional Compartmentalization and Viewpoint Generalization Within the Macaque Face-Processing System

(2010) W. A. Freiwald et al.   SCIENCE

The human brain in numbers: a linearly scaled-up primate brain

(2009) Suzana Herculano-Houzel   Frontiers in Human Neuroscience

Efficient correction of inhomogeneous static magnetic field-induced distortion in Echo Planar Imaging

(2009) Dominic Holland et al.   NEUROIMAGE

Effects of heartbeat and respiration on macaque fMRI: Implications for functional connectivity

(2009) Tobias Teichert et al.   NEUROPSYCHOLOGIA

Brain morphometry with multiecho MPRAGE

(2008) André J.W. van der Kouwe et al.   NEUROIMAGE

Improved cortical-layer specificity of vascular space occupancy fMRI with slab inversion relative to spin-echo BOLD at 9.4 T

(2008) Tao Jin et al.   NEUROIMAGE

Comparing face patch systems in macaques and humans

(2008) D. Y. Tsao et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Bottom-Up Dependent Gating of Frontal Signals in Early Visual Cortex

(2008) L. B. Ekstrom et al.   SCIENCE