Article
Microbiology
Victoria Palma, Maria Soledad Gutierrez, Orlando Vargas, Raghuveer Parthasarathy, Paola Navarrete
Summary: Bacterial motility is a common characteristic that can be studied through various methods, with three-dimensional imaging being advantageous in microscopic approaches. Understanding bacterial motility is also important for studying bacterial-host interactions.
Review
Biochemistry & Molecular Biology
Georgina C. Dowd, Roman Mortuza, Keith Ireton
Summary: The review summarizes the mechanisms of cell-to-cell spread by intracellular bacterial pathogens utilizing actin-based motility, with a focus on protrusion formation and internalization. It also examines the dynamic behavior of bacterial populations during spread and highlights recent findings of intercellular spread by an extracellular bacterial pathogen.
TRENDS IN MICROBIOLOGY
(2021)
Article
Multidisciplinary Sciences
Maros Pleska, David Jordan, Zak Frentz, BingKan Xue, Stanislas Leibler
Summary: By studying the swimming behavior of Escherichia coli, it was found that the behavioral space is low-dimensional, with variations mainly occurring along two independent and interpretable behavioral traits. Statistical decomposition of diversity revealed that individuality is the primary source of diversity, while changeability also contributes significantly. Even though closely related individuals may have significantly different traits, they exhibit positive correlations across different generations.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
(2021)
Article
Multidisciplinary Sciences
Liqiang Song, John D. Perpich, Chenggang Wu, Thierry Doan, Zuzanna Nowakowska, Jan Potempa, Peter J. Christie, Eric Cascales, Richard J. Lamont, Bo Hu
Summary: This study reveals the structure and assembly of P. gingivalis T9SS and its correlation with the development of periodontal disease. The T9SS shows unique structure and mechanisms.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
(2022)
Article
Physics, Fluids & Plasmas
Shlomit Peled, Shawn D. Ryan, Sebastian Heidenreich, Markus Baer, Gil Ariel, Avraham Be'er
Summary: Heterogeneous systems of active matter exhibit complex emergent dynamical patterns. Mixed swarms of cells with different aspect ratios were studied experimentally and in simulations, revealing that long cells act as nucleation sites for rapidly moving short cells, enhancing swarming speeds. However, high fractions of long cells can create bottlenecks for efficient swarming.
Article
Multidisciplinary Sciences
Leticia C. Beltran, Virginija Cvirkaite-Krupovic, Jessalyn Miller, Fengbin Wang, Mark A. B. Kreutzberger, Jonasz B. Patkowski, Tiago R. D. Costa, Stefan Schouten, Ilya Levental, Vincent P. Conticello, Edward H. Egelman, Mart Krupovic
Summary: Conjugation is a vital process in horizontal gene transfer, facilitating the spread of antibiotic resistance among human pathogens. It relies on a mating pilus, an extracellular structure that connects the donor and recipient cells. While the conjugation machinery in bacteria is encoded by plasmids or transposons and transfers homologous mobile genetic elements, little is known about conjugation in archaea. This study examines the atomic structures of three conjugative pili, two from hyperthermophilic archaea and one encoded by the Ti plasmid of Agrobacterium tumefaciens, revealing that the archaeal pili are similar to bacterial mating pili. However, the archaeal conjugation machinery (Ced) has been "domesticated" with its genes encoded on the chromosome, facilitating the transfer of cellular DNA.
NATURE COMMUNICATIONS
(2023)
Article
Multidisciplinary Sciences
Long Gui, William J. O'Shaughnessy, Kai Cai, Evan Reetz, Michael L. Reese, Daniela Nicastro
Summary: In this study, cryo-FIB-milling and cryo-electron tomography were used to visualize the 3D structure of the apical complex in apicomplexan parasites. The structure and motion of the conoid-fibers and spiral-shaped conoid complex were analyzed in both protruded and retracted states. The researchers also observed actin-like filaments connecting the conoid and apical-polar-rings during protrusion, suggesting a role in conoid movements and secretion.
NATURE COMMUNICATIONS
(2023)
Article
Multidisciplinary Sciences
Oscar Vargas-Rodriguez, Ahmed H. Badran, Kyle S. Hoffman, Manyun Chen, Ana Crnkovi, Yousong Ding, Jonathan R. Krieger, Eric Westhof, Dieter Soll, Sergey Melnikov
Summary: Misincorporation of amino acids due to mistranslation is an emerging paradigm in microbial studies, with many pathogens deliberately altering their genetic code to aid in invasion or immune evasion. This study identifies a unique tRNA synthetase/tRNA pair in plant pathogens that allows for the mistranslation of specific codons, leading to the creation of a hidden proteome diversity. This finding highlights the mechanism by which important plant pathogens can alter the identity of their sense codons for their benefit.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
(2021)
Article
Microbiology
Victor Munoz-Hisado, Fatima Ruiz-Blas, Jesus Manuel Sobrado, Eva Garcia-Lopez, Emma Martinez-Alonso, Alberto Alcazar, Cristina Cid
Summary: The exploration of Mars is important for understanding its potential habitability. Recent studies have suggested the presence of liquid water in subglacial lakes below the South pole of Mars. In this study, two bacterial species were subjected to a simulated Martian environment to investigate their adaptation mechanisms. The results showed that the bacteria employed different strategies for survival.
FRONTIERS IN MICROBIOLOGY
(2023)
Article
Biochemical Research Methods
Bin Ni, Remy Colin, Victor Sourjik
Summary: Minicells, nanosized membrane vesicles produced by bacteria, are potentially attractive in biomedical applications due to their stability and lack of chromosome. By overexpressing flagellar genes, engineered minicells were able to exhibit motility and chemotaxis towards chemoattractants, making them promising for active effector delivery and specific targeting in tissues and cells.
ACS SYNTHETIC BIOLOGY
(2021)
Review
Biochemistry & Molecular Biology
Parisa Koutsifeli, Upasna Varma, Lorna J. Daniels, Marco Annandale, Xun Li, Joshua P. H. Neale, Sarah Hayes, Kate L. Weeks, Samuel James, Lea M. D. Delbridge, Kimberley M. Mellor
Summary: Autophagy is an essential cellular process that involves the degradation of excess or defective macromolecules and organelles to maintain homeostatic recycling. Recent studies have revealed a more complex understanding of selective autophagy pathways. Glycophagy, as a selective degradation process of glycogen, plays a crucial metabolic role in the transport and delivery of glycolytic fuel substrate. Although the study of glycophagy is still in its early stages, it provides important insights into cellular energy metabolism. Moreover, glycogen metabolic mishandling is linked to various metabolic diseases in different tissues such as the liver, skeletal muscle, cardiac muscle, and brain. Therefore, advancements in this field hold broad multidisciplinary interest for different cell types and metabolic states.
JOURNAL OF BIOLOGICAL CHEMISTRY
(2022)
Article
Biotechnology & Applied Microbiology
Jonathan D. Partridge
Summary: The survival and successful spread of many bacterial species depend on their mode of motility, and swarming is a distinct form of collective motility where a dense group of bacteria use flagella to move across solid surfaces. Surface environments present unique challenges due to higher friction/tension and inadequate hydration, and bacteria have developed various mechanisms to overcome these challenges. In addition to enabling bacteria to colonize new terrains without bulk liquid, swarming also provides faster speeds and enhanced antibiotic resistance to the collective, contributing to the dissemination and pathogenicity of different bacterial species.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY
(2022)
Review
Biochemistry & Molecular Biology
Ishita Tripathi-Giesgen, Christian Behrends, Arno F. Alpi
Summary: The ubiquitin system plays a crucial role in the host cellular defense program against bacterial infection, especially when certain bacteria are exposed to the host cytosol during invasion. Host cell E3 ubiquitin ligases contribute to the formation of a protective ubiquitin coat on invading pathogens, with their divergent ubiquitin conjugation mechanisms influencing the complexity of the anti-bacterial coating. Bacteria have evolved strategies to evade the activities of the host ubiquitin system.
Article
Physics, Fluids & Plasmas
Yuki Takaha, Daiki Nishiguchi
Summary: Microswimmers exhibit more diverse behavior in quasi-two dimensions than in three dimensions. Such behavior remains elusive due to the analytical difficulty of dealing with two parallel solid boundaries. The existence of additional obstacles in quasi-two dimensional systems further complicates the analysis.
Review
Microbiology
Joao Nuno de Sousa Machado, Sonja-Verena Albers, Bertram Daum
Summary: Motile archaea use a molecular machine called the archaellum to swim. The archaellum consists of a motor attached to a membrane and a filament. It is exclusively found in members of the archaeal domain, but its motor shares similarities with the motor of type IV pili.
FRONTIERS IN MICROBIOLOGY
(2022)
Article
Physics, Fluids & Plasmas
Anders Andersen, Navish Wadhwa, Thomas Kiorboe
Review
Biology
Erik A. Martens, Navish Wadhwa, Nis S. Jacobsen, Christian Lindemann, Ken H. Andersen, Andre Visser
PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES
(2015)
Review
Geochemistry & Geophysics
K. H. Andersen, T. Berge, R. J. Goncalves, M. Hartvig, J. Heuschele, S. Hylander, N. S. Jacobsen, C. Lindemann, E. A. Martens, A. B. Neuheimer, K. Olsson, A. Palacz, A. E. F. Prowe, J. Sainmont, S. J. Traving, A. W. Visser, N. Wadhwa, T. Kiorboe
ANNUAL REVIEW OF MARINE SCIENCE, VOL 8
(2016)
Article
Biology
Navish Wadhwa, Anders Andersen, Thomas Kiorboe
JOURNAL OF EXPERIMENTAL BIOLOGY
(2014)
Article
Physics, Multidisciplinary
Navish Wadhwa, Pavlos Vlachos, Sunghwan Jung
PHYSICAL REVIEW LETTERS
(2013)
Editorial Material
Mechanics
Navish Wadhwa, Sunghwan Jung
Article
Multidisciplinary Sciences
Thomas Kiorboe, Houshuo Jiang, Rodrigo Javier Goncalves, Lasse Tor Nielsen, Navish Wadhwa
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
(2014)
Article
Multidisciplinary Sciences
Navish Wadhwa, Rob Phillips, Howard C. Berg
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
(2019)
Article
Multidisciplinary Sciences
Abhishek Shrivastava, Howard C. Berg
Article
Multidisciplinary Sciences
Navish Wadhwa, Yuhai Tu, Howard C. Berg
Summary: Motility is crucial for the survival and dispersal of many bacteria, and plays a role during infections. Recent research has shown that the bidirectional flagellar motor of E. coli adjusts torque-generating units in response to changes in load, representing a robust strategy for quickly regulating output.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
(2021)
Review
Biochemistry & Molecular Biology
Haidai Hu, Monica Santiveri, Navish Wadhwa, Howard C. Berg, Marc Erhardt, Nicholas M. Taylor
Summary: This review summarizes recent advances in the understanding of the structure and function of the flagellar stator unit, torque generation, and directional switching of the motor. Recent studies using cryo-electron microscopy and in situ cryo-electron tomography revealed details of the assembly, ion flux pathway, and torque generation mechanism of the stator unit.
TRENDS IN BIOCHEMICAL SCIENCES
(2022)
Article
Multidisciplinary Sciences
Navish Wadhwa, Alberto Sassi, Howard C. Berg, Yuhai Tu
Summary: Combining experiments with modeling, the authors propose a model for mechano-adaptation in the bacterial flagellar motor, finding that load-dependent transitions between multiple internal states govern the binding and unbinding of subunits. This study sheds light on the molecular mechanism behind mechano-adaptation and has implications for understanding adaptation in other macromolecular complexes.
NATURE COMMUNICATIONS
(2022)