Extracellular crosslinking mass spectrometry reveals HLA class I – HLA class II interactions on the cell surface

Proteome-Wide Structural Probing of Low-Abundant Protein Interactions by Cross-Linking Mass Spectrometry

(2020) Julius Fürsch et al.   ANALYTICAL CHEMISTRY

Missing regions within the molecular architecture of human fibrin clots structurally resolved by XL-MS and integrative structural modeling

(2020) Oleg Klykov et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Proteomic and interactomic insights into the molecular basis of cell functional diversity

(2020) Isabell Bludau et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

How paired PSII–LHCII supercomplexes mediate the stacking of plant thylakoid membranes unveiled by structural mass-spectrometry

(2020) Pascal Albanese et al.   Nature Communications

Combining Information from Crosslinks and Monolinks in the Modeling of Protein Structures

(2020) Matthew Sinnott et al.   STRUCTURE

Structural analysis of 70S ribosomes by cross-linking/mass spectrometry reveals conformational plasticity

(2020) Christian Tüting et al.   Scientific Reports

Techniques for detecting protein-protein interactions in living cells: principles, limitations, and recent progress

(2019) Yaning Cui et al.   Science China-Life Sciences

Chemical tools for membrane protein structural biology

(2019) Qinghai Zhang et al.   CURRENT OPINION IN STRUCTURAL BIOLOGY

The EMBL-EBI search and sequence analysis tools APIs in 2019

(2019) Fábio Madeira et al.   NUCLEIC ACIDS RESEARCH

Cell Biology of T Cell Receptor Expression and Regulation

(2018) Andrés Alcover et al.   Annual Review of Immunology

A novel orange-colored bimolecular fluorescence complementation (BiFC) assay using monomeric Kusabira-Orange protein

(2018) Yuta Fujii et al.   BIOTECHNIQUES

Integrating Cross-Linking Experiments with Ab Initio Protein–Protein Docking

(2018) Thom Vreven et al.   JOURNAL OF MOLECULAR BIOLOGY

Chemical Crosslinking Mass Spectrometry Analysis of Protein Conformations and Supercomplexes in Heart Tissue

(2018) Juan D. Chavez et al.   Cell Systems

Development of in Planta Chemical Cross-Linking-Based Quantitative Interactomics in Arabidopsis

(2018) Shichang Liu et al.   JOURNAL OF PROTEOME RESEARCH

A two-hybrid antibody micropattern assay reveals specific in cis interactions of MHC I heavy chains at the cell surface

(2018) Cindy Dirscherl et al.   eLife

Extent of MHC Clustering Regulates Selectivity and Effectiveness of T Cell Responses

(2018) Nadia Anikeeva et al.   JOURNAL OF IMMUNOLOGY

Cross-ID: Analysis and Visualization of Complex XL–MS-Driven Protein Interaction Networks

(2018) Sebastiaan C. de Graaf et al.   JOURNAL OF PROTEOME RESEARCH

The PRIDE database and related tools and resources in 2019: improving support for quantification data

(2018) Yasset Perez-Riverol et al.   NUCLEIC ACIDS RESEARCH

Molecular Mechanisms of GPCR Signaling: A Structural Perspective

(2017) Vsevolod Gurevich et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Optimized cryo-focused ion beam sample preparation aimed at in situ structural studies of membrane proteins

(2017) Miroslava Schaffer et al.   JOURNAL OF STRUCTURAL BIOLOGY

The interactome of intact mitochondria by cross-linking mass spectrometry provides evidence for coexisting respiratory supercomplexes

(2017) Fan Liu et al.   MOLECULAR & CELLULAR PROTEOMICS

Architecture of the human interactome defines protein communities and disease networks

(2017) Edward L. Huttlin et al.   NATURE

Identification of CMTM6 and CMTM4 as PD-L1 protein regulators

(2017) Riccardo Mezzadra et al.   NATURE

Optimized fragmentation schemes and data analysis strategies for proteome-wide cross-link identification

(2017) Fan Liu et al.   Nature Communications

Dual Molecular Mechanisms Govern Escape at Immunodominant HLA A2-Restricted HIV Epitope

(2017) David K. Cole et al.   Frontiers in Immunology

Structure and Function of the Nuclear Pore Complex Cytoplasmic mRNA Export Platform

(2016) Javier Fernandez-Martinez et al.   CELL

Integrin-mediated mechanotransduction

(2016) Zhiqi Sun et al.   JOURNAL OF CELL BIOLOGY

The Importance of Non-accessible Crosslinks and Solvent Accessible Surface Distance in Modeling Proteins with Restraints From Crosslinking Mass Spectrometry

(2016) Joshua Matthew Allen Bullock et al.   MOLECULAR & CELLULAR PROTEOMICS

DisVis: quantifying and visualizing accessible interaction space of distance-restrained biomolecular complexes: Fig. 1.

(2015) G.C.P. van Zundert et al.   BIOINFORMATICS

xiNET: Cross-link Network Maps With Residue Resolution

(2015) Colin W. Combe et al.   MOLECULAR & CELLULAR PROTEOMICS

FRAP, FLIM, and FRET: Detection and analysis of cellular dynamics on a molecular scale using fluorescence microscopy

(2015) Carla De Los Santos et al.   MOLECULAR REPRODUCTION AND DEVELOPMENT

The I-TASSER Suite: protein structure and function prediction

(2015) Jianyi Yang et al.   NATURE METHODS

In situ single molecule imaging of cell membranes: linking basic nanotechniques to cell biology, immunology and medicine

(2014) Jiang Pi et al.   Nanoscale

EBV-transformed lymphoblastoid cell lines as vaccines against cancer testis antigen-positive tumors

(2013) Frank Neumann et al.   CANCER IMMUNOLOGY IMMUNOTHERAPY

Cryo-electron tomography: The challenge of doing structural biology in situ

(2013) Vladan Lučić et al.   JOURNAL OF CELL BIOLOGY

Lifetime of Major Histocompatibility Complex Class-I Membrane Clusters Is Controlled by the Actin Cytoskeleton

(2012) Yael Lavi et al.   BIOPHYSICAL JOURNAL

Crystal structure of a complete ternary complex of T-cell receptor, peptide-MHC, and CD4

(2012) Y. Yin et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Optimizing the enrichment of cross-linked products for mass spectrometric protein analysis

(2012) Romy Fritzsche et al.   RAPID COMMUNICATIONS IN MASS SPECTROMETRY

The Molecular Architecture of the Eukaryotic Chaperonin TRiC/CCT

(2012) Alexander Leitner et al.   STRUCTURE

Architecture of the RNA polymerase II–TFIIF complex revealed by cross-linking and mass spectrometry

(2010) Zhuo Angel Chen et al.   EMBO JOURNAL

Identification of cross-linked peptides from large sequence databases

(2008) Oliver Rinner et al.   NATURE METHODS