Homeostasis drives intense microbial trace metal processing on marine particles

Microbial iron and carbon metabolism as revealed by taxonomy-specific functional diversity in the Southern Ocean

(2021) Ying Sun et al.   ISME Journal

Microbial iron metabolism as revealed by gene expression profiles in contrasted Southern Ocean regimes

(2019) Pavla Debeljak et al.   ENVIRONMENTAL MICROBIOLOGY

Resupply of mesopelagic dissolved iron controlled by particulate iron composition

(2019) M. Bressac et al.   Nature Geoscience

Quorum sensing and iron regulate a two-for-one siderophore gene cluster inVibrio harveyi

(2018) Darcy L. McRose et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Carbonate-sensitive phytotransferrin controls high-affinity iron uptake in diatoms

(2018) Jeffrey B. McQuaid et al.   NATURE

eggNOG 5.0: a hierarchical, functionally and phylogenetically annotated orthology resource based on 5090 organisms and 2502 viruses

(2018) Jaime Huerta-Cepas et al.   NUCLEIC ACIDS RESEARCH

The integral role of iron in ocean biogeochemistry

(2017) Alessandro Tagliabue et al.   NATURE

Metal homeostasis and resistance in bacteria

(2017) Pete Chandrangsu et al.   NATURE REVIEWS MICROBIOLOGY

Direct Heme Uptake by Phytoplankton-Associated Roseobacter Bacteria

(2017) Shane L. Hogle et al.   mSystems

Trace Metal Acquisition by Marine Heterotrophic Bacterioplankton with Contrasting Trophic Strategies

(2016) Shane L. Hogle et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Complex heatmaps reveal patterns and correlations in multidimensional genomic data

(2016) Zuguang Gu et al.   BIOINFORMATICS

BlastKOALA and GhostKOALA: KEGG Tools for Functional Characterization of Genome and Metagenome Sequences

(2016) Minoru Kanehisa et al.   JOURNAL OF MOLECULAR BIOLOGY

Siderophore-based microbial adaptations to iron scarcity across the eastern Pacific Ocean

(2016) Rene M. Boiteau et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Differential remineralization of major and trace elements in sinking diatoms

(2016) Benjamin S. Twining et al.   LIMNOLOGY AND OCEANOGRAPHY

MEGAHIT: an ultra-fast single-node solution for large and complex metagenomics assembly via succinct de Bruijn graph

(2015) Dinghua Li et al.   BIOINFORMATICS

Evaluation of approaches to estimate biogenic particulate trace metals in the ocean

(2015) Sara Rauschenberg et al.   MARINE CHEMISTRY

Hydroxamate siderophore secretion by Pseudoalteromonas haloplanktis during steady-state and transient growth under iron limitation

(2015) A Sijerčić et al.   MARINE ECOLOGY PROGRESS SERIES

KEGG as a reference resource for gene and protein annotation

(2015) Minoru Kanehisa et al.   NUCLEIC ACIDS RESEARCH

Hydroxamate siderophore secretion by Pseudoalteromonas haloplanktis during steady-state and transient growth under iron limitation

(2015) A Sijerčić et al.   MARINE ECOLOGY PROGRESS SERIES

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

Recent developments in copper and zinc homeostasis in bacterial pathogens

(2014) Joseph J Braymer et al.   CURRENT OPINION IN CHEMICAL BIOLOGY

Metal oxyhydroxide dissolution as promoted by structurally diverse siderophores and oxalate

(2014) Martin M. Akafia et al.   GEOCHIMICA ET COSMOCHIMICA ACTA

Evolutionary Ecology of the Marine Roseobacter Clade

(2014) Haiwei Luo et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

Fast and sensitive protein alignment using DIAMOND

(2014) Benjamin Buchfink et al.   NATURE METHODS

Single bacterial strain capable of significant contribution to carbon cycling in the surface ocean

(2014) B. E. Pedler et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Microbial iron uptake as a mechanism for dispersing iron from deep-sea hydrothermal vents

(2014) Meng Li et al.   Nature Communications

Structure of a complete four-domain chitinase fromMoritella marina, a marine psychrophilic bacterium

(2013) Piotr H. Malecki et al.   ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY

featureCounts: an efficient general purpose program for assigning sequence reads to genomic features

(2013) Y. Liao et al.   BIOINFORMATICS

SortMeRNA: fast and accurate filtering of ribosomal RNAs in metatranscriptomic data

(2012) Evguenia Kopylova et al.   BIOINFORMATICS

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

Public good dynamics drive evolution of iron acquisition strategies in natural bacterioplankton populations

(2012) O. X. Cordero et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Disassembling Iron Availability to Phytoplankton

(2012) Yeala Shaked et al.   Frontiers in Microbiology

Methanogenic archaea are globally ubiquitous in aerated soils and become active under wet anoxic conditions

(2011) Roey Angel et al.   ISME Journal

Adaptive strategies by Southern Ocean phytoplankton to lessen iron limitation: Uptake of organically complexed iron and reduced cellular iron requirements

(2011) Robert F. Strzepek et al.   LIMNOLOGY AND OCEANOGRAPHY

Mechanisms of nickel toxicity in microorganisms

(2011) Lee Macomber et al.   Metallomics

Dust- and mineral-iron utilization by the marine dinitrogen-fixer Trichodesmium

(2011) Maxim Rubin et al.   Nature Geoscience

Nitrogenase Gene Amplicons from Global Marine Surface Waters Are Dominated by Genes of Non-Cyanobacteria

(2011) Hanna Farnelid et al.   PLoS One

Modern sampling and analytical methods for the determination of trace elements in marine particulate material using magnetic sector inductively coupled plasma–mass spectrometry

(2010) Andrew R. Bowie et al.   ANALYTICA CHIMICA ACTA

Prodigal: prokaryotic gene recognition and translation initiation site identification

(2010) Doug Hyatt et al.   BMC BIOINFORMATICS

Genome characteristics of a generalist marine bacterial lineage

(2010) Ryan J Newton et al.   ISME Journal

Remineralization of upper ocean particles: Implications for iron biogeochemistry

(2010) P. W. Boyd et al.   LIMNOLOGY AND OCEANOGRAPHY

The biogeochemical cycle of iron in the ocean

(2010) P. W. Boyd et al.   Nature Geoscience

Microbial Iron Acquisition: Marine and Terrestrial Siderophores

(2009) Moriah Sandy et al.   CHEMICAL REVIEWS

Coordination Chemistry of Bacterial Metal Transport and Sensing

(2009) Zhen Ma et al.   CHEMICAL REVIEWS

Rapid bacterial mineralization of organic carbon produced during a phytoplankton bloom induced by natural iron fertilization in the Southern Ocean

(2008) Ingrid Obernosterer et al.   DEEP-SEA RESEARCH PART II-TOPICAL STUDIES IN OCEANOGRAPHY

How do bacterial cells ensure that metalloproteins get the correct metal?

(2008) Kevin J. Waldron et al.   NATURE REVIEWS MICROBIOLOGY

Rapid chemotactic response enables marine bacteria to exploit ephemeral microscale nutrient patches

(2008) R. Stocker et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA