Soil pH determines bacterial distribution and assembly processes in natural mountain forests of eastern China

Space Is More Important than Season when Shaping Soil Microbial Communities at a Large Spatial Scale

(2020) Kaoping Zhang et al.   mSystems

Bacteria but not fungi respond to soil acidification rapidly and consistently in both a spruce and beech forest

(2020) Michal Choma et al.   FEMS MICROBIOLOGY ECOLOGY

Salinity Is a Key Determinant for Soil Microbial Communities in a Desert Ecosystem

(2019) Kaoping Zhang et al.   mSystems

Changes in belowground biodiversity during ecosystem development

(2019) Manuel Delgado-Baquerizo et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Soil pH mediates the balance between stochastic and deterministic assembly of bacteria

(2018) Binu M. Tripathi et al.   ISME Journal

Soil abiotic variables are more important than Salicaceae phylogeny or habitat specialization in determining soil microbial community structure

(2018) Sonya Erlandson et al.   MOLECULAR ECOLOGY

Plant attributes explain the distribution of soil microbial communities in two contrasting regions of the globe

(2018) Manuel Delgado-Baquerizo et al.   NEW PHYTOLOGIST

Soil pH correlates with the co-occurrence and assemblage process of diazotrophic communities in rhizosphere and bulk soils of wheat fields

(2018) Kunkun Fan et al.   SOIL BIOLOGY & BIOCHEMISTRY

Spatial scale affects the relative role of stochasticity versus determinism in soil bacterial communities in wheat fields across the North China Plain

(2018) Yu Shi et al.   Microbiome

Direct and indirect effects of a pH gradient bring insights into the mechanisms driving prokaryotic community structures

(2018) Daniel R. Lammel et al.   Microbiome

Evolutionary history of the angiosperm flora of China

(2018) Li-Min Lu et al.   NATURE

Climate warming leads to divergent succession of grassland microbial communities

(2018) Xue Guo et al.   Nature Climate Change

Phylogenetic imprint of woody plants on the soil mycobiome in natural mountain forests of eastern China

(2018) Teng Yang et al.   ISME Journal

Soil organic matter availability and climate drive latitudinal patterns in bacterial diversity from tropical to cold temperate forests

(2017) Jing Tian et al.   FUNCTIONAL ECOLOGY

Stochastic Community Assembly: Does It Matter in Microbial Ecology?

(2017) Jizhong Zhou et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

Forest Soil Bacteria: Diversity, Involvement in Ecosystem Processes, and Response to Global Change

(2017) Salvador Lladó et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

Phylogenetic diversity anomaly in angiosperms between eastern Asia and eastern North America

(2017) Hong Qian et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Rhizosphere-associated bacterial network structure and spatial distribution differ significantly from bulk soil in wheat crop fields

(2017) Kunkun Fan et al.   SOIL BIOLOGY & BIOCHEMISTRY

Evolutionary conservation of a core root microbiome across plant phyla along a tropical soil chronosequence

(2017) Yun Kit Yeoh et al.   Nature Communications

Distinct Biogeographic Patterns for Archaea, Bacteria, and Fungi along the Vegetation Gradient at the Continental Scale in Eastern China

(2017) Bin Ma et al.   mSystems

Palaeoclimate explains a unique proportion of the global variation in soil bacterial communities

(2017) Manuel Delgado-Baquerizo et al.   Nature Ecology & Evolution

Root biomass and exudates link plant diversity with soil bacterial and fungal biomass

(2017) Nico Eisenhauer et al.   Scientific Reports

An update of the Angiosperm Phylogeny Group classification for the orders and families of flowering plants: APG IV

(2016)   BOTANICAL JOURNAL OF THE LINNEAN SOCIETY

Ericoid Roots and Mycospheres Govern Plant-Specific Bacterial Communities in Boreal Forest Humus

(2016) Sari Timonen et al.   MICROBIAL ECOLOGY

Ecology of the forest microbiome: Highlights of temperate and boreal ecosystems

(2016) S. Uroz et al.   SOIL BIOLOGY & BIOCHEMISTRY

Nitrogen fertilization directly affects soil bacterial diversity and indirectly affects bacterial community composition

(2016) Jun Zeng et al.   SOIL BIOLOGY & BIOCHEMISTRY

A New Perspective on Microbes Formerly Known as Nitrite-Oxidizing Bacteria

(2016) Holger Daims et al.   TRENDS IN MICROBIOLOGY

Temperature mediates continental-scale diversity of microbes in forest soils

(2016) Jizhong Zhou et al.   Nature Communications

Biogeographic Distribution Patterns of Bacteria in Typical Chinese Forest Soils

(2016) Zongwei Xia et al.   Frontiers in Microbiology

Distinctive Tropical Forest Variants Have Unique Soil Microbial Communities, But Not Always Low Microbial Diversity

(2016) Binu M. Tripathi et al.   Frontiers in Microbiology

Stable-Isotope Probing Identifies Uncultured Planctomycetes as Primary Degraders of a Complex Heteropolysaccharide in Soil

(2015) Xiaoqing Wang et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Relating belowground microbial composition to the taxonomic, phylogenetic, and functional trait distributions of trees in a tropical forest

(2015) Albert Barberán et al.   ECOLOGY LETTERS

Land use, soil and litter chemistry drive bacterial community structures in samples of the rainforest and Cerrado (Brazilian Savannah) biomes in Southern Amazonia

(2015) Daniel Renato Lammel et al.   EUROPEAN JOURNAL OF SOIL BIOLOGY

Disentangling mechanisms that mediate the balance between stochastic and deterministic processes in microbial succession

(2015) Francisco Dini-Andreote et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The bacterial community inhabiting temperate deciduous forests is vertically stratified and undergoes seasonal dynamics

(2015) Rubén López-Mondéjar et al.   SOIL BIOLOGY & BIOCHEMISTRY

Composition of fungal and bacterial communities in forest litter and soil is largely determined by dominant trees

(2015) Michaela Urbanová et al.   SOIL BIOLOGY & BIOCHEMISTRY

Estimating and mapping ecological processes influencing microbial community assembly

(2015) James C. Stegen et al.   Frontiers in Microbiology

Vegetation-Associated Impacts on Arctic Tundra Bacterial and Microeukaryotic Communities

(2014) Yu Shi et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Characterizing changes in soil bacterial community structure in response to short-term warming

(2014) Jinbo Xiong et al.   FEMS MICROBIOLOGY ECOLOGY

Soil pH Determines Microbial Diversity and Composition in the Park Grass Experiment

(2014) Kateryna Zhalnina et al.   MICROBIAL ECOLOGY

High throughput sequencing analysis of biogeographical distribution of bacterial communities in the black soils of northeast China

(2014) Junjie Liu et al.   SOIL BIOLOGY & BIOCHEMISTRY

Soil properties and tree species drive ß-diversity of soil bacterial communities

(2014) William J. Landesman et al.   SOIL BIOLOGY & BIOCHEMISTRY

Microbial functional genes involved in nitrogen fixation, nitrification and denitrification in forest ecosystems

(2014) David J. Levy-Booth et al.   SOIL BIOLOGY & BIOCHEMISTRY

Rapid recovery of soil bacterial communities after wildfire in a Chinese boreal forest

(2014) Xingjia Xiang et al.   Scientific Reports

Quantifying community assembly processes and identifying features that impose them

(2013) James C Stegen et al.   ISME Journal

Phylogenetic beta diversity in bacterial assemblages across ecosystems: deterministic versus stochastic processes

(2013) Jianjun Wang et al.   ISME Journal

Rhizosphere microbiome assemblage is affected by plant development

(2013) Jacqueline M Chaparro et al.   ISME Journal

Patterns and Processes of Microbial Community Assembly

(2013) D. R. Nemergut et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

Three keys to the radiation of angiosperms into freezing environments

(2013) Amy E. Zanne et al.   NATURE

Predictive functional profiling of microbial communities using 16S rRNA marker gene sequences

(2013) Morgan G I Langille et al.   NATURE BIOTECHNOLOGY

Stochastic and deterministic assembly processes in subsurface microbial communities

(2012) James C Stegen et al.   ISME Journal

Soil pH drives the spatial distribution of bacterial communities along elevation on Changbai Mountain

(2012) Congcong Shen et al.   SOIL BIOLOGY & BIOCHEMISTRY

Plant symbionts: keys to the phytosphere

(2012) Teng Yang et al.   SYMBIOSIS

The bacterial biogeography of British soils

(2011) Robert I. Griffiths et al.   ENVIRONMENTAL MICROBIOLOGY

An improved Greengenes taxonomy with explicit ranks for ecological and evolutionary analyses of bacteria and archaea

(2011) Daniel McDonald et al.   ISME Journal

Patterns and driving factors of WUE and NUE in natural forest ecosystems along the North-South Transect of Eastern China

(2011) Wenping Sheng et al.   Journal of Geographical Sciences

Pyrosequencing-Based Assessment of Bacterial Community Structure Along Different Management Types in German Forest and Grassland Soils

(2011) Heiko Nacke et al.   PLoS One

Picante: R tools for integrating phylogenies and ecology

(2010) S. W. Kembel et al.   BIOINFORMATICS

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

Soil bacterial and fungal communities across a pH gradient in an arable soil

(2010) Johannes Rousk et al.   ISME Journal

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

Conceptual Synthesis in Community Ecology

(2010) Mark Vellend   QUARTERLY REVIEW OF BIOLOGY

Pyrosequencing-Based Assessment of Soil pH as a Predictor of Soil Bacterial Community Structure at the Continental Scale

(2009) C. L. Lauber et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

A comprehensive survey of soil acidobacterial diversity using pyrosequencing and clone library analyses

(2009) Ryan T Jones et al.   ISME Journal

Regulation and function of root exudates

(2009) DAYAKAR V. BADRI et al.   PLANT CELL AND ENVIRONMENT

Phylocom: software for the analysis of phylogenetic community structure and trait evolution

(2008) Campbell O. Webb et al.   BIOINFORMATICS

The unseen majority: soil microbes as drivers of plant diversity and productivity in terrestrial ecosystems

(2008) Marcel G. A. van der Heijden et al.   ECOLOGY LETTERS

Differences in soil bacterial diversity: driven by contemporary disturbances or historical contingencies?

(2008) Yuan Ge et al.   ISME Journal