Clinical likelihood ratios and balanced accuracy for 44 in silico tools against multiple large-scale functional assays of cancer susceptibility genes
出版年份 2021 全文链接
标题
Clinical likelihood ratios and balanced accuracy for 44 in silico tools against multiple large-scale functional assays of cancer susceptibility genes
作者
关键词
-
出版物
GENETICS IN MEDICINE
Volume -, Issue -, Pages -
出版商
Springer Science and Business Media LLC
发表日期
2021-07-06
DOI
10.1038/s41436-021-01265-z
参考文献
相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。- Strong functional data for pathogenicity or neutrality classify BRCA2 DNA-binding-domain variants of uncertain significance
- (2021) Marcy E. Richardson et al. AMERICAN JOURNAL OF HUMAN GENETICS
- The advantages of the Matthews correlation coefficient (MCC) over F1 score and accuracy in binary classification evaluation
- (2020) Davide Chicco et al. BMC GENOMICS
- An Integrated Deep-Mutational-Scanning Approach Provides Clinical Insights on PTEN Genotype-Phenotype Relationships
- (2020) Taylor L. Mighell et al. AMERICAN JOURNAL OF HUMAN GENETICS
- The mutational constraint spectrum quantified from variation in 141,456 humans
- (2020) Konrad J. Karczewski et al. NATURE
- Assessing performance of pathogenicity predictors using clinically relevant variant datasets
- (2020) Adam C Gunning et al. JOURNAL OF MEDICAL GENETICS
- Massively parallel functional testing of MSH2 missense variants conferring Lynch syndrome risk
- (2020) Xiaoyan Jia et al. AMERICAN JOURNAL OF HUMAN GENETICS
- Specifications of the ACMG/AMP variant interpretation guidelines for germline TP53 variants
- (2020) Cristina Fortuno et al. HUMAN MUTATION
- Combining evidence for and against pathogenicity for variants in cancer susceptibility genes: CanVIG-UK consensus recommendations
- (2020) Alice Garrett et al. JOURNAL OF MEDICAL GENETICS
- How good are pathogenicity predictors in detecting benign variants?
- (2019) Abhishek Niroula et al. PLoS Computational Biology
- Recommendations for the collection and use of multiplexed functional data for clinical variant interpretation
- (2019) Hannah Gelman et al. Genome Medicine
- Assessment of the Clinical Relevance of BRCA2 Missense Variants by Functional and Computational Approaches
- (2018) Lucia Guidugli et al. AMERICAN JOURNAL OF HUMAN GENETICS
- Modeling the ACMG/AMP variant classification guidelines as a Bayesian classification framework
- (2018) Sean V Tavtigian et al. GENETICS IN MEDICINE
- Comprehensive annotation of BRCA1 and BRCA2 missense variants by functionally validated sequence-based computational prediction models
- (2018) Steven N. Hart et al. GENETICS IN MEDICINE
- Multiplex assessment of protein variant abundance by massively parallel sequencing
- (2018) Kenneth A. Matreyek et al. NATURE GENETICS
- Accurate classification of BRCA1 variants with saturation genome editing
- (2018) Gregory M. Findlay et al. NATURE
- Mutational processes shape the landscape of TP53 mutations in human cancer
- (2018) Andrew O. Giacomelli et al. NATURE GENETICS
- UniProt: a worldwide hub of protein knowledge
- (2018) NUCLEIC ACIDS RESEARCH
- Clinical laboratories collaborate to resolve differences in variant interpretations submitted to ClinVar
- (2017) Steven M. Harrison et al. GENETICS IN MEDICINE
- Sources of discordance among germ-line variant classifications in ClinVar
- (2017) Shan Yang et al. GENETICS IN MEDICINE
- The Human Gene Mutation Database: towards a comprehensive repository of inherited mutation data for medical research, genetic diagnosis and next-generation sequencing studies
- (2017) Peter D. Stenson et al. HUMAN GENETICS
- ClinVar: improving access to variant interpretations and supporting evidence
- (2017) Melissa J Landrum et al. NUCLEIC ACIDS RESEARCH
- REVEL: An Ensemble Method for Predicting the Pathogenicity of Rare Missense Variants
- (2016) Nilah M. Ioannidis et al. AMERICAN JOURNAL OF HUMAN GENETICS
- Standards and guidelines for the interpretation of sequence variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology
- (2015) Sue Richards et al. GENETICS IN MEDICINE
- The Evaluation of Tools Used to Predict the Impact of Missense Variants Is Hindered by Two Types of Circularity
- (2015) Dominik G. Grimm et al. HUMAN MUTATION
- Identifying Mendelian disease genes with the Variant Effect Scoring Tool
- (2013) Hannah Carter et al. BMC GENOMICS
- Overfitting in prediction models – Is it a problem only in high dimensions?
- (2013) Jyothi Subramanian et al. Contemporary Clinical Trials
- The Human Gene Mutation Database: building a comprehensive mutation repository for clinical and molecular genetics, diagnostic testing and personalized genomic medicine
- (2013) Peter D. Stenson et al. HUMAN GENETICS
- Functional Assays for Analysis of Variants of Uncertain Significance inBRCA2
- (2013) Lucia Guidugli et al. HUMAN MUTATION
- ClinVar: public archive of relationships among sequence variation and human phenotype
- (2013) Melissa J. Landrum et al. NUCLEIC ACIDS RESEARCH
- SIFT web server: predicting effects of amino acid substitutions on proteins
- (2012) Ngak-Leng Sim et al. NUCLEIC ACIDS RESEARCH
- Using SIFT and PolyPhen to Predict Loss-of-Function and Gain-of-Function Mutations
- (2010) Sarah E. Flanagan et al. Genetic Testing and Molecular Biomarkers
- A method and server for predicting damaging missense mutations
- (2010) Ivan A Adzhubei et al. NATURE METHODS
- MutationTaster evaluates disease-causing potential of sequence alterations
- (2010) Jana Marie Schwarz et al. NATURE METHODS
- ANNOVAR: functional annotation of genetic variants from high-throughput sequencing data
- (2010) K. Wang et al. NUCLEIC ACIDS RESEARCH
- In silico analysis of missense substitutions using sequence-alignment based methods
- (2008) Sean V. Tavtigian et al. HUMAN MUTATION
Discover Peeref hubs
Discuss science. Find collaborators. Network.
Join a conversationAdd your recorded webinar
Do you already have a recorded webinar? Grow your audience and get more views by easily listing your recording on Peeref.
Upload Now