SARS-CoV-2 variants lacking ORF8 occurred in farmed mink and pangolin

SARS-CoV-2 variants combining spike mutations and the absence of ORF8 may be more transmissible and require close monitoring

(2021) Filipe Pereira   BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS

Mutational analysis of SARS-CoV-2 ORF8 during six months of COVID-19 pandemic

(2021) Ahmad Alkhansa et al.   Gene Reports

We shouldn’t worry when a virus mutates during disease outbreaks

(2020) Nathan D. Grubaugh et al.   Nature Microbiology

A Genomic Perspective on the Origin and Emergence of SARS-CoV-2

(2020) Yong-Zhen Zhang et al.   CELL

A SARS-CoV-2 protein interaction map reveals targets for drug repurposing

(2020) David E. Gordon et al.   NATURE

Identifying SARS-CoV-2 related coronaviruses in Malayan pangolins

(2020) Tommy Tsan-Yuk Lam et al.   NATURE

Infection of dogs with SARS-CoV-2

(2020) Thomas H. C. Sit et al.   NATURE

The proximal origin of SARS-CoV-2

(2020) Kristian G. Andersen et al.   NATURE MEDICINE

Pangolins Harbor SARS-CoV-2-Related Coronaviruses

(2020) Guan-Zhu Han   TRENDS IN MICROBIOLOGY

Deep mutational scanning of SARS-CoV-2 receptor binding domain reveals constraints on folding and ACE2 binding

(2020) Tyler N. Starr et al.   CELL

SARS-CoV-2 infection in farmed minks, the Netherlands, April and May 2020

(2020) Nadia Oreshkova et al.   Eurosurveillance

Adaptation of SARS-CoV-2 in BALB/c mice for testing vaccine efficacy

(2020) Hongjing Gu et al.   SCIENCE

First detection and genome sequencing of SARS‐CoV‐2 in an infected cat in France

(2020) Corinne Sailleau et al.   Transboundary and Emerging Diseases

Discovery and Genomic Characterization of a 382-Nucleotide Deletion in ORF7b and ORF8 during the Early Evolution of SARS-CoV-2

(2020) Yvonne C. F. Su et al.   mBio

A dynamic nomenclature proposal for SARS-CoV-2 lineages to assist genomic epidemiology

(2020) Andrew Rambaut et al.   Nature Microbiology

Lost in deletion: The enigmatic ORF8 protein of SARS-CoV-2

(2020) Luca Zinzula   BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS

Effects of a major deletion in the SARS-CoV-2 genome on the severity of infection and the inflammatory response: an observational cohort study

(2020) Barnaby E Young et al.   LANCET

Broad host range of SARS-CoV-2 predicted by comparative and structural analysis of ACE2 in vertebrates

(2020) Joana Damas et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

SARS-CoV-2 ORF8 and SARS-CoV ORF8ab: Genomic Divergence and Functional Convergence

(2020) Sameer Mohammad et al.   Pathogens

SARS-CoV-2 and the human-animal interface: outbreaks on mink farms

(2020) Marion Koopmans   LANCET INFECTIOUS DISEASES

Computational Analysis of SARS-CoV-2 and SARS-Like Coronavirus Diversity in Human, Bat and Pangolin Populations

(2020) Nicholas J. Dimonaco et al.   Viruses-Basel

SMS: Smart Model Selection in PhyML

(2017) Vincent Lefort et al.   MOLECULAR BIOLOGY AND EVOLUTION

New Algorithms and Methods to Estimate Maximum-Likelihood Phylogenies: Assessing the Performance of PhyML 3.0

(2010) Stéphane Guindon et al.   SYSTEMATIC BIOLOGY

Rates of evolutionary change in viruses: patterns and determinants

(2008) Siobain Duffy et al.   NATURE REVIEWS GENETICS