Barriers and corridors of gene flow in an urbanized tropical reef system

Genetic structure is stronger across human-impacted habitats than among islands in the coral Porites lobata

(2020) Kaho H. Tisthammer et al.   PeerJ

Extreme seascape drives local recruitment and genetic divergence in brooding and spawning corals in remote north‐west Australia

(2020) Jim N. Underwood et al.   Evolutionary Applications

The current application of ecological connectivity in the design of marine protected areas

(2019) Arieanna C. Balbar et al.   Global Ecology and Conservation

Last species standing: loss of Pocilloporidae corals associated with coastal urbanization in a tropical city state

(2019) Rosa Celia Poquita-Du et al.   Marine Biodiversity

Maximising genetic diversity during coral transplantation from a highly impacted source reef

(2019) Lutfi Afiq-Rosli et al.   CONSERVATION GENETICS

Light limitation selects for depth generalists in urbanised reef coral communities

(2019) Gwendolyn S.E. Chow et al.   MARINE ENVIRONMENTAL RESEARCH

Global warming impairs stock–recruitment dynamics of corals

(2019) Terry P. Hughes et al.   NATURE

Characterisation of coral-associated bacterial communities in an urbanised marine environment shows strong divergence over small geographic scales

(2019) Benjamin J. Wainwright et al.   CORAL REEFS

Populations of the coral species Montastraea cavernosa on the Belize Barrier Reef lack vertical connectivity

(2019) Ryan J. Eckert et al.   Scientific Reports

Environmental latitudinal gradients and host‐specificity shape Symbiodiniaceae distribution in Red Sea Porites corals

(2019) Tullia I. Terraneo et al.   JOURNAL OF BIOGEOGRAPHY

Seagrass‐associated fungal communities show distance decay of similarity that has implications for seagrass management and restoration

(2019) Benjamin J. Wainwright et al.   Ecology and Evolution

Characterization of fungal biodiversity and communities associated with the reef macroalga Sargassum ilicifolium reveals fungal community differentiation according to geographic locality and algal structure

(2019) Benjamin J. Wainwright et al.   Marine Biodiversity

Replicated anthropogenic hybridisations reveal parallel patterns of admixture in marine mussels

(2019) Alexis Simon et al.   Evolutionary Applications

Contrasting patterns of genetic connectivity in brooding and spawning corals across a remote atoll system in northwest Australia

(2019) Luke Thomas et al.   CORAL REEFS

ResDisMapper : An r package for fine‐scale mapping of resistance to dispersal

(2019) Qian Tang et al.   Molecular Ecology Resources

Comparing patterns of taxonomic, functional and phylogenetic diversity in reef coral communities

(2018) Joy S. Y. Wong et al.   CORAL REEFS

Human activities and landscape features interact to closely define the distribution and dispersal of an urban commensal

(2018) Qian Tang et al.   Evolutionary Applications

Seagrass-associated fungal communities follow Wallace's line, but host genotype does not structure fungal community

(2018) Benjamin J. Wainwright et al.   JOURNAL OF BIOGEOGRAPHY

Genetic signatures through space, time and multiple disturbances in a ubiquitous brooding coral

(2018) Jim N. Underwood et al.   MOLECULAR ECOLOGY

Gravity of human impacts mediates coral reef conservation gains

(2018) Joshua E. Cinner et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Spatial and temporal patterns of mass bleaching of corals in the Anthropocene

(2018) Terry P. Hughes et al.   SCIENCE

Posterior Summarization in Bayesian Phylogenetics Using Tracer 1.7

(2018) Andrew Rambaut et al.   SYSTEMATIC BIOLOGY

Biologically representative and well-connected marine reserves enhance biodiversity persistence in conservation planning

(2018) Rafael A. Magris et al.   Conservation Letters

Contemporary and historical oceanographic processes explain genetic connectivity in a Southwestern Atlantic coral

(2018) L. Peluso et al.   Scientific Reports

Recruitment Drives Spatial Variation in Recovery Rates of Resilient Coral Reefs

(2018) Sally J. Holbrook et al.   Scientific Reports

The Eastern Tropical Pacific coral population connectivity and the role of the Eastern Pacific Barrier

(2018) Mauricio Romero-Torres et al.   Scientific Reports

Global warming transforms coral reef assemblages

(2018) Terry P. Hughes et al.   NATURE

Coral connectivity between equatorial eastern Pacific marine protected areas: A biophysical modeling approach

(2018) Bertrand D. Lequeux et al.   PLoS One

High genetic differentiation and low connectivity in the coral Pocillopora damicornis type β at different spatial scales in the Southwestern Indian Ocean and the Tropical Southwestern Pacific

(2018) Pauline Gélin et al.   MARINE BIOLOGY

Multiple Facets of Marine Invertebrate Conservation Genomics

(2018) Jose V. Lopez et al.   Annual Review of Animal Biosciences

Contrasting patterns of population structure and gene flow facilitate exploration of connectivity in two widely distributed temperate octocorals

(2017) L P Holland et al.   HEREDITY

The K = 2 conundrum

(2017) Jasmine K. Janes et al.   MOLECULAR ECOLOGY

Global warming and recurrent mass bleaching of corals

(2017) Terry P. Hughes et al.   NATURE

Coral reefs in the Anthropocene

(2017) Terry P. Hughes et al.   NATURE

Population structure and connectivity of the mountainous star coral, Orbicella faveolata , throughout the wider Caribbean region

(2017) John P. Rippe et al.   Ecology and Evolution

Connectivity and systemic resilience of the Great Barrier Reef

(2017) Karlo Hock et al.   PLOS BIOLOGY

Deep reefs are not universal refuges: Reseeding potential varies among coral species

(2017) Pim Bongaerts et al.   Science Advances

Genotype and local environment dynamically influence growth, disturbance response and survivorship in the threatened coral, Acropora cervicornis

(2017) Crawford Drury et al.   PLoS One

Effective Dispersal of Caribbean Reef Fish is Smaller than Current Spacing Among Marine Protected Areas

(2017) Diana M. Beltrán et al.   Scientific Reports

Patterns of bleaching and recovery of Montipora capitata in Kāne‘ohe Bay, Hawai‘i, USA

(2016) R Cunning et al.   MARINE ECOLOGY PROGRESS SERIES

A study on the recovery of Tobago's coral reefs following the 2010 mass bleaching event

(2016) Salome Buglass et al.   MARINE POLLUTION BULLETIN

The role of marine reserves in the replenishment of a locally impacted population of anemonefish on the Great Barrier Reef

(2016) Mary C. Bonin et al.   MOLECULAR ECOLOGY

The DNA of coral reef biodiversity: predicting and protecting genetic diversity of reef assemblages

(2016) Kimberly A. Selkoe et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Reefgenomics.Org - a repository for marine genomics data

(2016) Yi Jin Liew et al.   Database-The Journal of Biological Databases and Curation

Coral recovery in the central Maldives archipelago since the last major mass-bleaching, in 1998

(2016) C. Pisapia et al.   Scientific Reports

Long distance dispersal and vertical gene flow in the Caribbean brooding coral Porites astreoides

(2016) Xaymara M. Serrano et al.   Scientific Reports

Population Connectivity Measures of Fishery-Targeted Coral Reef Species to Inform Marine Reserve Network Design in Fiji

(2016) Erin K. Eastwood et al.   Scientific Reports

Patterns of bleaching and recovery of Montipora capitata in Kāne‘ohe Bay, Hawai‘i, USA

(2016) R Cunning et al.   MARINE ECOLOGY PROGRESS SERIES

Formation of the Isthmus of Panama

(2016) A. ODea et al.   Science Advances

The urban marine environment of Singapore

(2016) Tsai Min Sin et al.   Regional Studies in Marine Science

Warming Trends and Bleaching Stress of the World’s Coral Reefs 1985–2012

(2016) Scott F. Heron et al.   Scientific Reports

Integrating multiple species connectivity and habitat quality into conservation planning for coral reefs

(2015) Rafael A. Magris et al.   ECOGRAPHY

Species are hypotheses: avoid connectivity assessments based on pillars of sand

(2015) Eric Pante et al.   MOLECULAR ECOLOGY

Clumpak : a program for identifying clustering modes and packaging population structure inferences across K

(2015) Naama M. Kopelman et al.   Molecular Ecology Resources

Coral Settlement on a Highly Disturbed Equatorial Reef System

(2015) Andrew G. Bauman et al.   PLoS One

Clues to unraveling the coral species problem: distinguishing species from geographic variation inPoritesacross the Pacific with molecular markers and microskeletal traits

(2015) Zac Forsman et al.   PeerJ

Novel R tools for analysis of genome-wide population genetic data with emphasis on clonality

(2015) Zhian N. Kamvar et al.   Frontiers in Genetics

circlize implements and enhances circular visualization in R

(2014) Zuguang Gu et al.   BIOINFORMATICS

Genetic connectivity of the broadcast spawning reef coral Platygyra sinensis on impacted reefs, and the description of new microsatellite markers

(2014) Y. C. Tay et al.   CORAL REEFS

Allelic Richness following Population Founding Events – A Stochastic Modeling Framework Incorporating Gene Flow and Genetic Drift

(2014) Gili Greenbaum et al.   PLoS One

With eyes wide open: a revision of species within and closely related to thePocillopora damicornisspecies complex (Scleractinia; Pocilloporidae) using morphology and genetics

(2014) Sebastian Schmidt-Roach et al.   ZOOLOGICAL JOURNAL OF THE LINNEAN SOCIETY

The application of genetics to marine management and conservation: examples from the Indo-Pacific

(2013) Sophie von der Heyden et al.   BULLETIN OF MARINE SCIENCE

Modelling dispersal and connectivity of broadcast spawning corals at the global scale

(2013) S. Wood et al.   GLOBAL ECOLOGY AND BIOGEOGRAPHY

Blind to morphology: genetics identifies several widespread ecologically common species and few endemics among Indo-Pacific cauliflower corals (Pocillopora, Scleractinia)

(2013) Jorge H. Pinzón et al.   JOURNAL OF BIOGEOGRAPHY

Revisiting the connectivity puzzle of the common coralPocillopora damicornis

(2013) G. Torda et al.   MOLECULAR ECOLOGY

Nonconvergence in Bayesian estimation of migration rates

(2013) Patrick G. Meirmans   Molecular Ecology Resources

Recovery of an Isolated Coral Reef System Following Severe Disturbance

(2013) J. P. Gilmour et al.   SCIENCE

An overview of STRUCTURE: applications, parameter settings, and supporting software

(2013) Liliana Porras-Hurtado et al.   Frontiers in Genetics

Simulating the transport of broadcast coral larvae among the Southern Islands of Singapore

(2012) YC Tay et al.   Aquatic Biology

The Magnitude of Global Marine Species Diversity

(2012) Ward Appeltans et al.   CURRENT BIOLOGY

Synthesizing larval competence dynamics and reef-scale retention reveals a high potential for self-recruitment in corals

(2012) Joana Figueiredo et al.   ECOLOGY

Complete mitochondrial genomes and a novel spatial genetic method reveal cryptic phylogeographical structure and migration patterns among brown bears in north-western Eurasia

(2012) Marju Keis et al.   JOURNAL OF BIOGEOGRAPHY

No gene flow across the Eastern Pacific Barrier in the reef-building coralPorites lobata

(2012) Iliana B. Baums et al.   MOLECULAR ECOLOGY

Recommendations for utilizing and reporting population genetic analyses: the reproducibility of genetic clustering using the programstructure

(2012) Kimberly J. Gilbert et al.   MOLECULAR ECOLOGY

Persistence of self-recruitment and patterns of larval connectivity in a marine protected area network

(2012) Michael L. Berumen et al.   Ecology and Evolution

Biogeography of the Indo-Australian Archipelago

(2011) David J. Lohman et al.   Annual Review of Ecology Evolution and Systematics

PGDSpider: an automated data conversion tool for connecting population genetics and genomics programs

(2011) H. E. L. Lischer et al.   BIOINFORMATICS

Comparison of morphological and genetic analyses reveals cryptic divergence and morphological plasticity in Stylophora (Cnidaria, Scleractinia)

(2011) Fabrizio Stefani et al.   CORAL REEFS

Isolation by distance across the Hawaiian Archipelago in the reef-building coral Porites lobata

(2010) NICHOLAS R. POLATO et al.   MOLECULAR ECOLOGY

Larval Connectivity in an Effective Network of Marine Protected Areas

(2010) Mark R. Christie et al.   PLoS One

Correlated evolution of sex and reproductive mode in corals (Anthozoa: Scleractinia)

(2010) A. M. Kerr et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Rising to the challenge of sustaining coral reef resilience

(2010) Terry P. Hughes et al.   TRENDS IN ECOLOGY & EVOLUTION

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Restoration of coral populations in light of genetic diversity estimates

(2009) T. L. Shearer et al.   CORAL REEFS

Management under uncertainty: guide-lines for incorporating connectivity into the protection of coral reefs

(2009) L. J. McCook et al.   CORAL REEFS

The Great American Schism: Divergence of Marine Organisms After the Rise of the Central American Isthmus

(2008) H.A. Lessios   Annual Review of Ecology Evolution and Systematics

adegenet: a R package for the multivariate analysis of genetic markers

(2008) Thibaut Jombart   BIOINFORMATICS

A New Bayesian Method to Identify the Environmental Factors That Influence Recent Migration

(2008) P. Faubet et al.   GENETICS

A Genome-Scan Method to Identify Selected Loci Appropriate for Both Dominant and Codominant Markers: A Bayesian Perspective

(2008) M. Foll et al.   GENETICS