The landscape of accessible chromatin in quiescent cardiac fibroblasts and cardiac fibroblasts activated after myocardial infarction

The AP-1 Transcription Factor Fosl-2 Regulates Autophagy in Cardiac Fibroblasts during Myocardial Fibrogenesis

(2021) Jemima Seidenberg et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Runx1 promotes scar deposition and inhibits myocardial proliferation and survival during zebrafish heart regeneration

(2020) Jana Koth et al.   DEVELOPMENT

Cardiac Fibrosis and Cardiac Fibroblast Lineage-Tracing: Recent Advances

(2020) Xing Fu et al.   Frontiers in Physiology

The landscape of accessible chromatin in bovine oocytes and early embryos

(2020) Hao Ming et al.   Epigenetics

OneStopRNAseq: A Web Application for Comprehensive and Efficient Analyses of RNA-Seq Data

(2020) Rui Li et al.   Genes

Hippo pathway deletion in adult resting cardiac fibroblasts initiates a cell state transition with spontaneous and self-sustaining fibrosis

(2019) Yang Xiao et al.   GENES & DEVELOPMENT

Hippo Signaling Plays an Essential Role in Cell State Transitions during Cardiac Fibroblast Development

(2018) Yang Xiao et al.   DEVELOPMENTAL CELL

Specialized fibroblast differentiated states underlie scar formation in the infarcted mouse heart

(2018) Xing Fu et al.   JOURNAL OF CLINICAL INVESTIGATION

Analysis of rat cardiac myocytes and fibroblasts identifies combinatorial enhancer organization and transcription factor families

(2018) Tal Golan-Lagziel et al.   JOURNAL OF MOLECULAR AND CELLULAR CARDIOLOGY

Positional specificity of different transcription factor classes within enhancers

(2018) Sharon R. Grossman et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Myofibroblast-Specific TGFβ Receptor II Signaling in the Fibrotic Response to Cardiac Myosin Binding Protein C-Induced Cardiomyopathy

(2018) Qinghang Meng et al.   CIRCULATION RESEARCH

Fibroblast-specific TGF-β–Smad2/3 signaling underlies cardiac fibrosis

(2017) Hadi Khalil et al.   JOURNAL OF CLINICAL INVESTIGATION

Impact of cytosine methylation on DNA binding specificities of human transcription factors

(2017) Yimeng Yin et al.   SCIENCE

Targeted Ablation of Periostin-Expressing Activated Fibroblasts Prevents Adverse Cardiac Remodeling in MiceNovelty and Significance

(2016) Harmandeep Kaur et al.   CIRCULATION RESEARCH

Transcription factors as readers and effectors of DNA methylation

(2016) Heng Zhu et al.   NATURE REVIEWS GENETICS

Retrotransposons as regulators of gene expression

(2016) R. A. Elbarbary et al.   SCIENCE

Genetic lineage tracing defines myofibroblast origin and function in the injured heart

(2016) Onur Kanisicak et al.   Nature Communications

Single-cell chromatin accessibility reveals principles of regulatory variation

(2015) Jason D. Buenrostro et al.   NATURE

Characterization of TCF21 Downstream Target Regions Identifies a Transcriptional Network Linking Multiple Independent Coronary Artery Disease Loci

(2015) Olga Sazonova et al.   PLoS Genetics

Epigenetic regulation of transcription and possible functions of mammalian short interspersed elements, SINEs

(2015) Kenji Ichiyanagi   GENES & GENETIC SYSTEMS

c-kit+ cells minimally contribute cardiomyocytes to the heart

(2014) Jop H. van Berlo et al.   NATURE

RUNX1 is essential for mesenchymal stem cell proliferation and myofibroblast differentiation

(2014) Woosook Kim et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Chromatin accessibility: a window into the genome

(2014) Maria Tsompana et al.   Epigenetics & Chromatin

The retinaldehyde reductase DHRS3 is essential for preventing the formation of excess retinoic acid during embryonic development

(2013) Sara E. Billings et al.   FASEB JOURNAL

AMP-Activated Protein Kinase α1 but Not α2 Catalytic Subunit Potentiates Myogenin Expression and Myogenesis

(2013) Xing Fu et al.   MOLECULAR AND CELLULAR BIOLOGY

The Angiogenic Factor Secretoneurin Induces Coronary Angiogenesis in a Model of Myocardial Infarction by Stimulation of Vascular Endothelial Growth Factor Signaling in Endothelial Cells

(2012) Karin Albrecht-Schgoer et al.   CIRCULATION

Nf1 limits epicardial derivative expansion by regulating epithelial to mesenchymal transition and proliferation

(2012) S. T. Baek et al.   DEVELOPMENT

The bHLH transcription factor Tcf21 is required for lineage-specific EMT of cardiac fibroblast progenitors

(2012) A. Acharya et al.   DEVELOPMENT

Pod1/Tcf21 is regulated by retinoic acid signaling and inhibits differentiation of epicardium-derived cells into smooth muscle in the developing heart

(2012) Caitlin M. Braitsch et al.   DEVELOPMENTAL BIOLOGY

SINE Retrotransposons Cause Epigenetic Reprogramming of Adjacent Gene Promoters

(2012) M. R. H. Estecio et al.   MOLECULAR CANCER RESEARCH

C/EBP Transcription Factors Mediate Epicardial Activation During Heart Development and Injury

(2012) G. N. Huang et al.   SCIENCE

Inhibition of activator protein 1 signaling abrogates transforming growth factor β-mediated activation of fibroblasts and prevents experimental fibrosis

(2011) Jérôme Avouac et al.   ARTHRITIS AND RHEUMATISM

Functional and Mechanistic Diversity of Distal Transcription Enhancers

(2011) Michael Bulger et al.   CELL

Efficient inducible Cre-mediated recombination in Tcf21cell lineages in the heart and kidney

(2011) Asha Acharya et al.   GENESIS

LINE-1 Activity in Facultative Heterochromatin Formation during X Chromosome Inactivation

(2010) Jennifer C. Chow et al.   CELL

Smad3 Signaling Critically Regulates Fibroblast Phenotype and Function in Healing Myocardial Infarction

(2010) Marcin Dobaczewski et al.   CIRCULATION RESEARCH

Runx1 and Runx2 cooperate during sternal morphogenesis

(2010) A. Kimura et al.   DEVELOPMENT

A multifunctional reporter mouse line for Cre- and FLP-dependent lineage analysis

(2009) Masakazu Yamamoto et al.   GENESIS

Defining mechanisms that regulate RNA polymerase II transcription in vivo

(2009) Nicholas J. Fuda et al.   NATURE

The regulated retrotransposon transcriptome of mammalian cells

(2009) Geoffrey J Faulkner et al.   NATURE GENETICS

The stability of mRNA influences the temporal order of the induction of genes encoding inflammatory molecules

(2009) Shengli Hao et al.   NATURE IMMUNOLOGY

Synchronous and Stochastic Patterns of Gene Activation in theDrosophilaEmbryo

(2009) Alistair N. Boettiger et al.   SCIENCE

Possible involvement of SINEs in mammalian-specific brain formation

(2008) T. Sasaki et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Model-based Analysis of ChIP-Seq (MACS)

(2008) Yong Zhang et al.   GENOME BIOLOGY