Microbial community composition controls carbon flux across litter types in early phase of litter decomposition

Land Use and Seasonal Effects on the Soil Microbiome of a Brazilian Dry Forest

(2019) Gileno V. Lacerda-Júnior et al.   Frontiers in Microbiology

Managing Agroecosystems for Soil Microbial Carbon Use Efficiency: Ecological Unknowns, Potential Outcomes, and a Path Forward

(2019) Cynthia M. Kallenbach et al.   Frontiers in Microbiology

Machine learning to predict microbial community functions: An analysis of dissolved organic carbon from litter decomposition

(2019) Jaron Thompson et al.   PLoS One

Defining trait-based microbial strategies with consequences for soil carbon cycling under climate change

(2019) Ashish A. Malik et al.   ISME Journal

Succession of Microbial Decomposers Is Determined by Litter Type, but Site Conditions Drive Decomposition Rates

(2019) A. Buresova et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Microbial carbon use efficiency predicted from genome-scale metabolic models

(2019) Mustafa Saifuddin et al.   Nature Communications

Fungal-bacterial diversity and microbiome complexity predict ecosystem functioning

(2019) Cameron Wagg et al.   Nature Communications

Decomposer food web in a deciduous forest shows high share of generalist microorganisms and importance of microbial biomass recycling

(2018) Ruben López-Mondéjar et al.   ISME Journal

High Microbial Diversity Promotes Soil Ecosystem Functioning

(2018) Pierre-Alain Maron et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Oxidoreductases and Reactive Oxygen Species in Conversion of Lignocellulosic Biomass

(2018) Bastien Bissaro et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

Distributions of fungal melanin across species and soils

(2017) Cheta E. Siletti et al.   SOIL BIOLOGY & BIOCHEMISTRY

Developing a molecular picture of soil organic matter–mineral interactions by quantifying organo–mineral binding

(2017) C. J. Newcomb et al.   Nature Communications

A test of the hierarchical model of litter decomposition

(2017) Mark A. Bradford et al.   Nature Ecology & Evolution

Spatial Heterogeneity of SOM Concentrations Associated with White-rot Versus Brown-rot Wood Decay

(2017) Zhen Bai et al.   Scientific Reports

Soil C and N models that integrate microbial diversity

(2016) Benjamin P. Louis et al.   Environmental Chemistry Letters

The composition, localization and function of low-temperature-adapted microbial communities involved in methanogenic degradations of cellulose and chitin from Qinghai-Tibetan Plateau wetland soils

(2016) Y. Dai et al.   JOURNAL OF APPLIED MICROBIOLOGY

Soil Fungal:Bacterial Ratios Are Linked to Altered Carbon Cycling

(2016) Ashish A. Malik et al.   Frontiers in Microbiology

Microbes as Engines of Ecosystem Function: When Does Community Structure Enhance Predictions of Ecosystem Processes?

(2016) Emily B. Graham et al.   Frontiers in Microbiology

Understanding the dominant controls on litter decomposition

(2015) Mark A. Bradford et al.   JOURNAL OF ECOLOGY

Control of climate and litter quality on leaf litter decomposition in different climatic zones

(2015) Xinyue Zhang et al.   JOURNAL OF PLANT RESEARCH

Formation of soil organic matter via biochemical and physical pathways of litter mass loss

(2015) M. Francesca Cotrufo et al.   Nature Geoscience

Sequencing and beyond: integrating molecular 'omics' for microbial community profiling

(2015) Eric A. Franzosa et al.   NATURE REVIEWS MICROBIOLOGY

KEGG as a reference resource for gene and protein annotation

(2015) Minoru Kanehisa et al.   NUCLEIC ACIDS RESEARCH

Reference sequence (RefSeq) database at NCBI: current status, taxonomic expansion, and functional annotation

(2015) Nuala A. O'Leary et al.   NUCLEIC ACIDS RESEARCH

Soil bacterial and fungal community responses to nitrogen addition across soil depth and microhabitat in an arid shrubland

(2015) Rebecca C. Mueller et al.   Frontiers in Microbiology

Forest floor community metatranscriptomes identify fungal and bacterial responses to N deposition in two maple forests

(2015) Cedar N. Hesse et al.   Frontiers in Microbiology

Rothia Bacteremia: a 10-Year Experience at Mayo Clinic, Rochester, Minnesota

(2014) Poornima Ramanan et al.   JOURNAL OF CLINICAL MICROBIOLOGY

Climate fails to predict wood decomposition at regional scales

(2014) Mark A. Bradford et al.   Nature Climate Change

Trait-based approaches for understanding microbial biodiversity and ecosystem functioning

(2014) Sascha Krause et al.   Frontiers in Microbiology

Rothia marina sp. nov., isolated from an intertidal sediment of the South China Sea

(2013) Zhu-Xiang Liu et al.   ANTONIE VAN LEEUWENHOEK INTERNATIONAL JOURNAL OF GENERAL AND MOLECULAR MICROBIOLOGY

Soil carbon mineralisation responses to alterations of microbial diversity and soil structure

(2013) Sabrina Juarez et al.   BIOLOGY AND FERTILITY OF SOILS

Lignin and its effects on litter decomposition in forest ecosystems

(2013) Mohammed Mahabubur Rahman et al.   CHEMISTRY AND ECOLOGY

Differences in fungal and bacterial physiology alter soil carbon and nitrogen cycling: insights from meta-analysis and theoretical models

(2013) Bonnie G. Waring et al.   ECOLOGY LETTERS

UPARSE: highly accurate OTU sequences from microbial amplicon reads

(2013) Robert C Edgar   NATURE METHODS

Litter quality versus soil microbial community controls over decomposition: a quantitative analysis

(2013) Cory C. Cleveland et al.   OECOLOGIA

Plant species effect on the decomposition and chemical changes of leaf litter in grassland and pine and oak forest soils

(2013) Takashi Osono et al.   PLANT AND SOIL

The origin of litter chemical complexity during decomposition

(2012) Kyle Wickings et al.   ECOLOGY LETTERS

Who is who in litter decomposition? Metaproteomics reveals major microbial players and their biogeochemical functions

(2012) Thomas Schneider et al.   ISME Journal

Multiple mechanisms for trait effects on litter decomposition: moving beyond home-field advantage with a new hypothesis

(2012) Grégoire T. Freschet et al.   JOURNAL OF ECOLOGY

Temporal dynamics of microbial communities on decomposing leaf litter of 10 plant species in relation to decomposition rate

(2012) Sarah R. Bray et al.   SOIL BIOLOGY & BIOCHEMISTRY

Cycling downwards – dissolved organic matter in soils

(2012) Klaus Kaiser et al.   SOIL BIOLOGY & BIOCHEMISTRY

Persistence of soil organic matter as an ecosystem property

(2011) Michael W. I. Schmidt et al.   NATURE

Litter decomposition: what controls it and how can we alter it to sequester more carbon in forest soils?

(2010) Cindy E. Prescott   BIOGEOCHEMISTRY

Soil biodiversity and carbon cycling: a review and synthesis of studies examining diversity-function relationships

(2010) U. N. Nielsen et al.   EUROPEAN JOURNAL OF SOIL SCIENCE

Transformation of Quercus petraea litter: successive changes in litter chemistry are reflected in differential enzyme activity and changes in the microbial community composition

(2010) Jaroslav Šnajdr et al.   FEMS MICROBIOLOGY ECOLOGY

Examining the global distribution of dominant archaeal populations in soil

(2010) Scott T Bates et al.   ISME Journal

Deep soil organic matter—a key but poorly understood component of terrestrial C cycle

(2010) Cornelia Rumpel et al.   PLANT AND SOIL

Microbiome Profiling by Illumina Sequencing of Combinatorial Sequence-Tagged PCR Products

(2010) Gregory B. Gloor et al.   PLoS One

Testing the functional significance of microbial community composition

(2009) Michael S. Strickland et al.   ECOLOGY

Effects of Plant Litter Type and Additions of Nitrogen and Phosphorus on Bacterial Community-Level Physiological Profiles in a Brown Forest Soil

(2009) Takashi Kunito et al.   MICROBES AND ENVIRONMENTS

The metagenomics RAST server – a public resource for the automatic phylogenetic and functional analysis of metagenomes

(2008) F Meyer et al.   BMC BIOINFORMATICS

Molecular C dynamics downstream: The biochemical decomposition sequence and its impact on soil organic matter structure and function

(2008) A. Stuart Grandy et al.   SCIENCE OF THE TOTAL ENVIRONMENT