标题
Spatial transcriptional mapping of the human nephrogenic program
作者
关键词
human, kidney, nephron, single-cell, spatial, nephrogenesis, machine-learning, registration, networks, disease
出版物
DEVELOPMENTAL CELL
Volume 56, Issue 16, Pages 2381-2398.e6
出版商
Elsevier BV
发表日期
2021-08-23
DOI
10.1016/j.devcel.2021.07.017
参考文献
相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。- Single cell regulatory landscape of the mouse kidney highlights cellular differentiation programs and disease targets
- (2021) Zhen Miao et al. Nature Communications
- AP-2β/KCTD1 Control Distal Nephron Differentiation and Protect against Renal Fibrosis
- (2020) Alexander G. Marneros DEVELOPMENTAL CELL
- Hnf4a Is Required for the Development of Cdh6-Expressing Progenitors into Proximal Tubules in the Mouse Kidney
- (2020) Sierra S. Marable et al. JOURNAL OF THE AMERICAN SOCIETY OF NEPHROLOGY
- Kctd15 regulates nephron segment development by repressing Tfap2a activity
- (2020) Brooke E. Chambers et al. DEVELOPMENT
- Plasticity of distal nephron epithelia from human kidney organoids enables the induction of ureteric tip and stalk
- (2020) Sara E. Howden et al. Cell Stem Cell
- Single-cell analysis reveals congruence between kidney organoids and human fetal kidney
- (2019) Alexander N. Combes et al. Genome Medicine
- Single-cell transcriptomics reveals gene expression dynamics of human fetal kidney development
- (2019) Mazène Hochane et al. PLOS BIOLOGY
- Single cell analysis of the developing mouse kidney provides deeper insight into marker gene expression and ligand-receptor crosstalk
- (2019) Alexander N. Combes et al. DEVELOPMENT
- Comprehensive Integration of Single-Cell Data
- (2019) Tim Stuart et al. CELL
- Generation of Human PSC-Derived Kidney Organoids with Patterned Nephron Segments and a De Novo Vascular Network
- (2019) Jian Hui Low et al. Cell Stem Cell
- Tfap2a is a novel gatekeeper of nephron differentiation during kidney development
- (2019) Brooke E. Chambers et al. DEVELOPMENT
- In Vivo Developmental Trajectories of Human Podocyte Inform In Vitro Differentiation of Pluripotent Stem Cell-Derived Podocytes
- (2019) Tracy Tran et al. DEVELOPMENTAL CELL
- A catalog of genetic loci associated with kidney function from analyses of a million individuals
- (2019) Matthias Wuttke et al. NATURE GENETICS
- A single-nucleus RNA-sequencing pipeline to decipher the molecular anatomy and pathophysiology of human kidneys
- (2019) Blue B. Lake et al. Nature Communications
- Spatial transcriptome profiling by MERFISH reveals subcellular RNA compartmentalization and cell cycle-dependent gene expression
- (2019) Chenglong Xia et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Single-Cell Profiling Reveals Sex, Lineage, and Regional Diversity in the Mouse Kidney
- (2019) Andrew Ransick et al. DEVELOPMENTAL CELL
- Mapping the Mouse Cell Atlas by Microwell-Seq
- (2018) Xiaoping Han et al. CELL
- Progressive Recruitment of Mesenchymal Progenitors Reveals a Time-Dependent Process of Cell Fate Acquisition in Mouse and Human Nephrogenesis
- (2018) Nils O. Lindström et al. DEVELOPMENTAL CELL
- Conserved and Divergent Molecular and Anatomic Features of Human and Mouse Nephron Patterning
- (2018) Nils O. Lindström et al. JOURNAL OF THE AMERICAN SOCIETY OF NEPHROLOGY
- Conserved and Divergent Features of Mesenchymal Progenitor Cell Types within the Cortical Nephrogenic Niche of the Human and Mouse Kidney
- (2018) Nils O. Lindström et al. JOURNAL OF THE AMERICAN SOCIETY OF NEPHROLOGY
- Conserved and Divergent Features of Human and Mouse Kidney Organogenesis
- (2018) Nils O. Lindström et al. JOURNAL OF THE AMERICAN SOCIETY OF NEPHROLOGY
- SAVER: gene expression recovery for single-cell RNA sequencing
- (2018) Mo Huang et al. NATURE METHODS
- GIANT 2.0: genome-scale integrated analysis of gene networks in tissues
- (2018) Aaron K Wong et al. NUCLEIC ACIDS RESEARCH
- Single-cell transcriptomics of the mouse kidney reveals potential cellular targets of kidney disease
- (2018) Jihwan Park et al. SCIENCE
- Renal Subcapsular Transplantation of PSC-Derived Kidney Organoids Induces Neo-vasculogenesis and Significant Glomerular and Tubular Maturation In Vivo
- (2018) Cathelijne W. van den Berg et al. Stem Cell Reports
- Single-cell analysis of progenitor cell dynamics and lineage specification in the human fetal kidney
- (2018) Rajasree Menon et al. DEVELOPMENT
- Single-cell transcriptomics of 20 mouse organs creates a Tabula Muris
- (2018) et al. NATURE
- Visualizing and Interpreting Single-Cell Gene Expression Datasets with Similarity Weighted Nonnegative Embedding
- (2018) Yan Wu et al. Cell Systems
- Simultaneous epitope and transcriptome measurement in single cells
- (2017) Marlon Stoeckius et al. NATURE METHODS
- Transcriptomes of major renal collecting duct cell types in mouse identified by single-cell RNA-seq
- (2017) Lihe Chen et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- TheDrosophilaembryo at single-cell transcriptome resolution
- (2017) Nikos Karaiskos et al. SCIENCE
- Circulating osteoprotegerin is associated with chronic kidney disease in hypertensive patients
- (2017) Stella Bernardi et al. BMC Nephrology
- Identification of a neural crest stem cell niche by Spatial Genomic Analysis
- (2017) Antti Lignell et al. Nature Communications
- On the Dependency of Cellular Protein Levels on mRNA Abundance
- (2016) Yansheng Liu et al. CELL
- A high-resolution transcriptome map of cell cycle reveals novel connections between periodic genes and cancer
- (2016) Daniel Dominguez et al. CELL RESEARCH
- Differential regulation of mouse and human nephron progenitors by the Six family of transcriptional regulators
- (2016) Lori L. O'Brien et al. DEVELOPMENT
- Genome-wide prediction and functional characterization of the genetic basis of autism spectrum disorder
- (2016) Arjun Krishnan et al. NATURE NEUROSCIENCE
- Pappa2 is linked to salt-sensitive hypertension in Dahl S rats
- (2016) Allen W. Cowley et al. PHYSIOLOGICAL GENOMICS
- Genetic associations at 53 loci highlight cell types and biological pathways relevant for kidney function
- (2016) Cristian Pattaro et al. Nature Communications
- LAMP5 Fine-Tunes GABAergic Synaptic Transmission in Defined Circuits of the Mouse Brain
- (2016) Marie-Catherine Tiveron et al. PLoS One
- Clarifying Tissue Clearing
- (2015) Douglas S. Richardson et al. CELL
- Highly Parallel Genome-wide Expression Profiling of Individual Cells Using Nanoliter Droplets
- (2015) Evan Z. Macosko et al. CELL
- A Synthetic Niche for Nephron Progenitor Cells
- (2015) Aaron C. Brown et al. DEVELOPMENTAL CELL
- Deep Sequencing in Microdissected Renal Tubules Identifies Nephron Segment-Specific Transcriptomes
- (2015) J. W. Lee et al. JOURNAL OF THE AMERICAN SOCIETY OF NEPHROLOGY
- Spatial reconstruction of single-cell gene expression data
- (2015) Rahul Satija et al. NATURE BIOTECHNOLOGY
- Understanding multicellular function and disease with human tissue-specific networks
- (2015) Casey S Greene et al. NATURE GENETICS
- Sall1 balances self-renewal and differentiation of renal progenitor cells
- (2014) J. M. Basta et al. DEVELOPMENT
- Global Quantification of Tissue Dynamics in the Developing Mouse Kidney
- (2014) Kieran M. Short et al. DEVELOPMENTAL CELL
- Eya1 Interacts with Six2 and Myc to Regulate Expansion of the Nephron Progenitor Pool during Nephrogenesis
- (2014) Jinshu Xu et al. DEVELOPMENTAL CELL
- Large-scale evaluation of ANTs and FreeSurfer cortical thickness measurements
- (2014) Nicholas J. Tustison et al. NEUROIMAGE
- Single-gene causes of congenital anomalies of the kidney and urinary tract (CAKUT) in humans
- (2014) Asaf Vivante et al. PEDIATRIC NEPHROLOGY
- VEGAS2: Software for More Flexible Gene-Based Testing
- (2014) Aniket Mishra et al. Twin Research and Human Genetics
- In Vivo Clonal Analysis Reveals Lineage-Restricted Progenitor Characteristics in Mammalian Kidney Development, Maintenance, and Regeneration
- (2014) Yuval Rinkevich et al. Cell Reports
- HNF1B controls proximal-intermediate nephron segment identity in vertebrates by regulating Notch signalling components and Irx1/2
- (2013) C. Heliot et al. DEVELOPMENT
- The Extracellular Domain of Notch2 Increases Its Cell-Surface Abundance and Ligand Responsiveness during Kidney Development
- (2013) Zhenyi Liu et al. DEVELOPMENTAL CELL
- Iroquois Homeodomain Transcription Factors in Heart Development and Function
- (2012) Kyoung-Han Kim et al. CIRCULATION RESEARCH
- Invasion of Distal Nephron Precursors Associates with Tubular Interconnection during Nephrogenesis
- (2012) R. M. Kao et al. JOURNAL OF THE AMERICAN SOCIETY OF NEPHROLOGY
- Lgr5+ve Stem/Progenitor Cells Contribute to Nephron Formation during Kidney Development
- (2012) Nick Barker et al. Cell Reports
- FIMO: scanning for occurrences of a given motif
- (2011) Charles E. Grant et al. BIOINFORMATICS
- Canonical Wnt9b signaling balances progenitor cell expansion and differentiation during kidney development
- (2011) Courtney M. Karner et al. DEVELOPMENT
- ErbB4 Modulates Tubular Cell Polarity and Lumen Diameter during Kidney Development
- (2011) V. Veikkolainen et al. JOURNAL OF THE AMERICAN SOCIETY OF NEPHROLOGY
- Developmental Stages in Human Embryos: Revised and New Measurements
- (2010) Ronan O’Rahilly et al. CELLS TISSUES ORGANS
- Macula Densa Sensing and Signaling Mechanisms of Renin Release
- (2010) J. Peti-Peterdi et al. JOURNAL OF THE AMERICAN SOCIETY OF NEPHROLOGY
- Genetic kidney diseases
- (2010) Friedhelm Hildebrandt LANCET
- Ephrin-B2 controls VEGF-induced angiogenesis and lymphangiogenesis
- (2010) Yingdi Wang et al. NATURE
- The Notch Ligands Dll4 and Jagged1 Have Opposing Effects on Angiogenesis
- (2009) Rui Benedito et al. CELL
- Analysis of early nephron patterning reveals a role for distal RV proliferation in fusion to the ureteric tip via a cap mesenchyme-derived connecting segment
- (2009) Kylie Georgas et al. DEVELOPMENTAL BIOLOGY
- High-resolution gene expression analysis of the developing mouse kidney defines novel cellular compartments within the nephron progenitor population
- (2009) Joshua W. Mugford et al. DEVELOPMENTAL BIOLOGY
- Multiple loci associated with indices of renal function and chronic kidney disease
- (2009) Anna Köttgen et al. NATURE GENETICS
- MEME SUITE: tools for motif discovery and searching
- (2009) T. L. Bailey et al. NUCLEIC ACIDS RESEARCH
- The Sleipnir library for computational functional genomics
- (2008) C. Huttenhower et al. BIOINFORMATICS
- Six2 Defines and Regulates a Multipotent Self-Renewing Nephron Progenitor Population throughout Mammalian Kidney Development
- (2008) Akio Kobayashi et al. Cell Stem Cell
- A dual requirement for Iroquois genes during Xenopus kidney development
- (2008) P. Alarcon et al. DEVELOPMENT
- Bmp in Podocytes Is Essential for Normal Glomerular Capillary Formation
- (2008) H. Ueda et al. JOURNAL OF THE AMERICAN SOCIETY OF NEPHROLOGY
- SIX2 and BMP4 Mutations Associate With Anomalous Kidney Development
- (2008) S. Weber et al. JOURNAL OF THE AMERICAN SOCIETY OF NEPHROLOGY
- GUDMAP: The Genitourinary Developmental Molecular Anatomy Project
- (2008) A. P. McMahon et al. JOURNAL OF THE AMERICAN SOCIETY OF NEPHROLOGY
- Fate mapping using Cited1-CreERT2 mice demonstrates that the cap mesenchyme contains self-renewing progenitor cells and gives rise exclusively to nephronic epithelia
- (2007) Scott Boyle et al. DEVELOPMENTAL BIOLOGY
Publish scientific posters with Peeref
Peeref publishes scientific posters from all research disciplines. Our Diamond Open Access policy means free access to content and no publication fees for authors.
Learn MoreCreate your own webinar
Interested in hosting your own webinar? Check the schedule and propose your idea to the Peeref Content Team.
Create Now