Prediction of RBP binding sites on circRNAs using an LSTM-based deep sequence learning architecture
出版年份 2021 全文链接
标题
Prediction of RBP binding sites on circRNAs using an LSTM-based deep sequence learning architecture
作者
关键词
-
出版物
BRIEFINGS IN BIOINFORMATICS
Volume -, Issue -, Pages -
出版商
Oxford University Press (OUP)
发表日期
2021-08-05
DOI
10.1093/bib/bbab342
参考文献
相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。- Identifying the sequence specificities of circRNA-binding proteins based on a capsule network architecture
- (2021) Zhengfeng Wang et al. BMC BIOINFORMATICS
- CircPTPRA blocks the recognition of RNA N6-methyladenosine through interacting with IGF2BP1 to suppress bladder cancer progression
- (2021) Fei Xie et al. Molecular Cancer
- Dive Into Deep Learning
- (2020) Julianna M. Czum Journal of the American College of Radiology
- Matrix factorization with neural network for predicting circRNA-RBP interactions
- (2020) Zhengfeng Wang et al. BMC BIOINFORMATICS
- Transcriptome-wide profiles of circular RNA and RNA-binding protein interactions reveal effects on circular RNA biogenesis and cancer pathway expression
- (2020) Trine Line Hauge Okholm et al. Genome Medicine
- The Landscape of Circular RNA in Cancer
- (2019) Josh N. Vo et al. CELL
- CRIP: predicting circRNA-RBP interaction sites using a codon-based encoding and hybrid deep neural networks
- (2019) Kaiming Zhang et al. RNA
- Comprehensive characterization of circular RNAs in ~ 1000 human cancer cell lines
- (2019) Hang Ruan et al. Genome Medicine
- Identifying Cancer-Specific circRNA–RBP Binding Sites Based on Deep Learning
- (2019) Zhengfeng Wang et al. MOLECULES
- CircSLNN: Identifying RBP-Binding Sites on circRNAs via Sequence Labeling Neural Networks
- (2019) Yuqi Ju et al. Frontiers in Genetics
- High-Order Convolutional Neural Network Architecture for Predicting DNA-Protein Binding Sites
- (2018) Qinhu Zhang et al. IEEE-ACM Transactions on Computational Biology and Bioinformatics
- CircR2Disease: a manually curated database for experimentally supported circular RNAs associated with various diseases
- (2018) Chunyan Fan et al. Database-The Journal of Biological Databases and Curation
- The interaction of circRNAs and RNA binding proteins: An important part of circRNA maintenance and function
- (2018) Jiankun Zang et al. JOURNAL OF NEUROSCIENCE RESEARCH
- Non-coding RNA: More uses for genomic junk
- (2017) Karen Adelman et al. NATURE
- CSCD: a database for cancer-specific circular RNAs
- (2017) Siyu Xia et al. NUCLEIC ACIDS RESEARCH
- Identification of HuR target circular RNAs uncovers suppression of PABPN1 translation by CircPABPN1
- (2017) Kotb Abdelmohsen et al. RNA Biology
- CircRNA: a novel type of biomarker for cancer
- (2017) He-da Zhang et al. Breast Cancer
- FUS affects circular RNA expression in murine embryonic stem cell-derived motor neurons
- (2017) Lorenzo Errichelli et al. Nature Communications
- Circular RNA expression is abundant and correlated to aggressiveness in early-stage bladder cancer
- (2017) Trine Line Hauge Okholm et al. npj Genomic Medicine
- RBM20 Regulates Circular RNA Production From the Titin Gene
- (2016) Mohsin A Khan et al. CIRCULATION RESEARCH
- Foxo3 circular RNA retards cell cycle progression via forming ternary complexes with p21 and CDK2
- (2016) William W. Du et al. NUCLEIC ACIDS RESEARCH
- CircRNA-protein complexes: IMP3 protein component defines subfamily of circRNPs
- (2016) Tim Schneider et al. Scientific Reports
- The RNA Binding Protein Quaking Regulates Formation of circRNAs
- (2015) Simon J. Conn et al. CELL
- Predicting the sequence specificities of DNA- and RNA-binding proteins by deep learning
- (2015) Babak Alipanahi et al. NATURE BIOTECHNOLOGY
- CircInteractome: A web tool for exploring circular RNAs and their interacting proteins and microRNAs
- (2015) Dawood B. Dudekula et al. RNA Biology
- Exon Circularization Requires Canonical Splice Signals
- (2015) Stefan Starke et al. Cell Reports
- circBase: a database for circular RNAs
- (2014) Petar Glažar et al. RNA
- starBase v2.0: decoding miRNA-ceRNA, miRNA-ncRNA and protein–RNA interaction networks from large-scale CLIP-Seq data
- (2013) Jun-Hao Li et al. NUCLEIC ACIDS RESEARCH
- Circular RNAs are abundant, conserved, and associated with ALU repeats
- (2012) W. R. Jeck et al. RNA
- DREME: motif discovery in transcription factor ChIP-seq data
- (2011) Timothy L. Bailey BIOINFORMATICS
Discover Peeref hubs
Discuss science. Find collaborators. Network.
Join a conversationAsk a Question. Answer a Question.
Quickly pose questions to the entire community. Debate answers and get clarity on the most important issues facing researchers.
Get Started