Multi-locus genome-wide association studies for five yield-related traits in rice

Genome-wide association studies of ionomic and agronomic traits in USDA mini core collection of rice and comparative analyses of different mapping methods

(2020) Shuai Liu et al.   BMC PLANT BIOLOGY

Genome-Wide Association Studies for Pasmo Resistance in Flax (Linum usitatissimum L.)

(2019) Liqiang He et al.   Frontiers in Plant Science

GWAS analysis of sorghum association panel lines identifies SNPs associated with disease response to Texas isolates of Colletotrichum sublineola

(2019) Louis K. Prom et al.   THEORETICAL AND APPLIED GENETICS

Genome-wide association study and candidate gene analysis of alkalinity tolerance in japonica rice germplasm at the seedling stage

(2019) Ning Li et al.   Rice

Effect of multi-allele combination on rice grain size based on prediction of regression equation model

(2019) Hua Zhong et al.   MOLECULAR GENETICS AND GENOMICS

MADS78 and MADS79 Are Essential Regulators of Early Seed Development in Rice

(2019) Puneet Paul et al.   PLANT PHYSIOLOGY

Dissecting the role of MADS-box genes in monocot floral development and diversity

(2018) Cindy Callens et al.   JOURNAL OF EXPERIMENTAL BOTANY

Resequencing a core collection of upland cotton identifies genomic variation and loci influencing fiber quality and yield

(2018) Zhiying Ma et al.   NATURE GENETICS

Analysis of the functions of TaGW2 homoeologs in wheat grain weight and protein content traits

(2018) Yi Zhang et al.   PLANT JOURNAL

Effect of multiple allelic combinations of genes on regulating grain size in rice

(2018) Umakanta Ngangkham et al.   PLoS One

Genome-wide association study reveals candidate genes influencing lipids and diterpenes contents in Coffea arabica L

(2018) Gustavo C. Sant’Ana et al.   Scientific Reports

A One-Penny Imputed Genome from Next-Generation Reference Panels

(2018) Brian L. Browning et al.   AMERICAN JOURNAL OF HUMAN GENETICS

Genome-Wide Association Mapping of Starch Pasting Properties in Maize Using Single-Locus and Multi-Locus Models

(2018) Yang Xu et al.   Frontiers in Plant Science

Genome-Wide Association Studies of Photosynthetic Traits Related to Phosphorus Efficiency in Soybean

(2018) Haiyan Lü et al.   Frontiers in Plant Science

PopLDdecay: a fast and effective tool for linkage disequilibrium decay analysis based on variant call format files

(2018) Chi Zhang et al.   BIOINFORMATICS

Deciphering the Genetic Architecture of Cooked Rice Texture

(2018) Gopal Misra et al.   Frontiers in Plant Science

The Application of Multi-Locus GWAS for the Detection of Salt-Tolerance Loci in Rice

(2018) Yanru Cui et al.   Frontiers in Plant Science

Multi-Locus Genome-Wide Association Studies for 14 Main Agronomic Traits in Barley

(2018) Xin Hu et al.   Frontiers in Plant Science

Prediction and association mapping of agronomic traits in maize using multiple omic data

(2017) Y Xu et al.   HEREDITY

pKWmEB: integration of Kruskal–Wallis test with empirical Bayes under polygenic background control for multi-locus genome-wide association study

(2017) Wen-Long Ren et al.   HEREDITY

pLARmEB: integration of least angle regression with empirical Bayes for multilocus genome-wide association studies

(2017) J Zhang et al.   HEREDITY

Natural Variation in the Promoter of GSE5 Contributes to Grain Size Diversity in Rice

(2017) Penggen Duan et al.   Molecular Plant

Iterative sure independence screening EM-Bayesian LASSO algorithm for multi-locus genome-wide association studies

(2017) Cox Lwaka Tamba et al.   PLoS Computational Biology

OsSPL13 controls grain size in cultivated rice

(2016) Lizhen Si et al.   NATURE GENETICS

Joint-linkage mapping and GWAS reveal extensive genetic loci that regulate male inflorescence size in maize

(2016) Xun Wu et al.   PLANT BIOTECHNOLOGY JOURNAL

CRL6, a member of the CHD protein family, is required for crown root development in rice

(2016) Yihua Wang et al.   PLANT PHYSIOLOGY AND BIOCHEMISTRY

Iterative Usage of Fixed and Random Effect Models for Powerful and Efficient Genome-Wide Association Studies

(2016) Xiaolei Liu et al.   PLoS Genetics

Improving power and accuracy of genome-wide association studies via a multi-locus mixed linear model methodology

(2016) Shi-Bo Wang et al.   Scientific Reports

OsMADS26 negatively regulates resistance to pathogens and drought tolerance in rice.

(2015) Giang Ngan Khong et al.   PLANT PHYSIOLOGY

CHR729 Is a CHD3 Protein That Controls Seedling Development in Rice

(2015) Xiaoding Ma et al.   PLoS One

Breeding signatures of rice improvement revealed by a genomic variation map from a large germplasm collection

(2015) Weibo Xie et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

An overview of global rice production, supply, trade, and consumption

(2014) Sumithra Muthayya et al.   Annals of the New York Academy of Sciences

Molecular Genetic Dissection of Quantitative Trait Loci Regulating Rice Grain Size

(2014) Jianru Zuo et al.   Annual Review of Genetics

SNPhylo: a pipeline to construct a phylogenetic tree from huge SNP data

(2014) Tae-Ho Lee et al.   BMC GENOMICS

RiceVarMap: a comprehensive database of rice genomic variations

(2014) Hu Zhao et al.   NUCLEIC ACIDS RESEARCH

The Effects of Fluctuations in the Nutrient Supply on the Expression of Five Members of the AGL17 Clade of MADS-Box Genes in Rice

(2014) Chunyan Yu et al.   PLoS One

A meta-analysis of crop yield under climate change and adaptation

(2014) A. J. Challinor et al.   Nature Climate Change

Yield-related QTLs and Their Applications in Rice Genetic ImprovementF

(2012) Xufeng Bai et al.   Journal of Integrative Plant Biology

An efficient multi-locus mixed-model approach for genome-wide association studies in structured populations

(2012) Vincent Segura et al.   NATURE GENETICS

FaST linear mixed models for genome-wide association studies

(2011) Christoph Lippert et al.   NATURE METHODS

Genetic and Molecular Bases of Rice Yield

(2010) Yongzhong Xing et al.   Annual Review of Plant Biology

Variance component model to account for sample structure in genome-wide association studies

(2010) Hyun Min Kang et al.   NATURE GENETICS

Isolation and initial characterization of GW5, a major QTL associated with rice grain width and weight

(2008) Jianfeng Weng et al.   CELL RESEARCH

Identifying and exploiting grain yield genes in rice

(2008) Tomoaki Sakamoto et al.   CURRENT OPINION IN PLANT BIOLOGY

A causal C–A mutation in the second exon of GS3 highly associated with rice grain length and validated as a functional marker

(2008) Chuchuan Fan et al.   THEORETICAL AND APPLIED GENETICS

Gene Nomenclature System for Rice

(2008) Susan R. McCouch et al.   Rice