Genome-wide association study and transcriptome analysis discover new genes for bacterial leaf blight resistance in rice (Oryza sativa L.)

Natural variation in ZmFBL41 confers banded leaf and sheath blight resistance in maize

(2019) Ning Li et al.   NATURE GENETICS

Genome‐wide association study identifies an NLR gene that confers partial resistance to Magnaporthe oryzae in rice

(2019) Ming‐Hao Liu et al.   PLANT BIOTECHNOLOGY JOURNAL

Integrating GWAS and gene expression data for functional characterization of resistance to white mould in soya bean

(2018) Zixiang Wen et al.   PLANT BIOTECHNOLOGY JOURNAL

In Silico Analysis of Natural Resistance-Associated Macrophage Protein (NRAMP) Family of Transporters in Rice

(2018) Anitha Mani et al.   PROTEIN JOURNAL

PopLDdecay: a fast and effective tool for linkage disequilibrium decay analysis based on variant call format files

(2018) Chi Zhang et al.   BIOINFORMATICS

Genome-wide association study discovered candidate genes of Verticillium wilt resistance in upland cotton (Gossypium hirsutum L.)

(2017) Tinggang Li et al.   PLANT BIOTECHNOLOGY JOURNAL

The rice cultivar Baixiangzhan harbours a recessive gene xa42 (t ) determining resistance against Xanthomonas oryzae pv. oryzae

(2017) Li Q. Liang et al.   PLANT BREEDING

Genome-wide association analysis identifies resistance loci for bacterial blight in a diverse collection of indica rice germplasm

(2017) Fan Zhang et al.   PLoS One

Identification and linkage analysis of a new rice bacterial blight resistance gene from XM14, a mutant line from IR24

(2016) Constantine Busungu et al.   BREEDING SCIENCE

Identification and fine-mapping of a new resistance gene, Xa40, conferring resistance to bacterial blight races in rice (Oryza sativa L.)

(2015) Suk-Man Kim et al.   THEORETICAL AND APPLIED GENETICS

Genome-wide association analyses provide genetic and biochemical insights into natural variation in rice metabolism

(2014) Wei Chen et al.   NATURE GENETICS

The Rice TAL Effector-Dependent Resistance Protein XA10 Triggers Cell Death and Calcium Depletion in the Endoplasmic Reticulum

(2014) D. Tian et al.   PLANT CELL

Xa39, a novel dominant gene conferring broad-spectrum resistance toXanthomonas oryzaepv.oryzaein rice

(2014) F. Zhang et al.   PLANT PATHOLOGY

A novel conserved mechanism for plant NLR protein pairs: the “integrated decoy” hypothesis

(2014) Stella Cesari et al.   Frontiers in Plant Science

Oscyp71Z2 involves diterpenoid phytoalexin biosynthesis that contributes to bacterial blight resistance in rice

(2013) Wenqi Li et al.   PLANT SCIENCE

TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions

(2013) Daehwan Kim et al.   GENOME BIOLOGY

GAPIT: genome association and prediction integrated tool

(2012) Alexander E. Lipka et al.   BIOINFORMATICS

Iron deficiency affects plant defence responses and confers resistance to Dickeya dadantii and Botrytis cinerea

(2012) NAM PHUONG KIEU et al.   MOLECULAR PLANT PATHOLOGY

Cleavage and nuclear localization of the rice XA21 immune receptor

(2012) Chang-Jin Park et al.   Nature Communications

Improvement of bacterial blight resistance of hybrid rice in China using the Xa23 gene derived from wild rice (Oryza rufipogon)

(2011) Yong-Li Zhou et al.   CROP PROTECTION

Ortholog Alleles at Xa3/Xa26 Locus Confer Conserved Race-Specific Resistance against Xanthomonas oryzae in Rice

(2011) Hong-Jing Li et al.   Molecular Plant

A paralog of the MtN3/saliva family recessively confers race-specific resistance to Xanthomonas oryzae in rice

(2011) QINSONG LIU et al.   PLANT CELL AND ENVIRONMENT

Genome-wide nested association mapping of quantitative resistance to northern leaf blight in maize

(2011) J. A. Poland et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Genetic analysis and molecular mapping of a novel recessive gene xa34(t) for resistance against Xanthomonas oryzae pv. oryzae

(2011) Shen Chen et al.   THEORETICAL AND APPLIED GENETICS

GCTA: A Tool for Genome-wide Complex Trait Analysis

(2010) Jian Yang et al.   AMERICAN JOURNAL OF HUMAN GENETICS

Fast and accurate long-read alignment with Burrows–Wheeler transform

(2010) Heng Li et al.   BIOINFORMATICS

Genome-Wide Survey and Expression Analysis Suggest Diverse Roles of Glutaredoxin Gene Family Members During Development and Response to Various Stimuli in Rice

(2010) R. Garg et al.   DNA RESEARCH

The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data

(2010) A. McKenna et al.   GENOME RESEARCH

Recent progress and understanding of the molecular mechanisms of the rice-Magnaporthe oryzaeinteraction

(2010) JINLING LIU et al.   MOLECULAR PLANT PATHOLOGY

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

(2010) Cole Trapnell et al.   NATURE BIOTECHNOLOGY

Variance component model to account for sample structure in genome-wide association studies

(2010) Hyun Min Kang et al.   NATURE GENETICS

Genome-wide association studies of 14 agronomic traits in rice landraces

(2010) Xuehui Huang et al.   NATURE GENETICS

Rice xa13 Recessive Resistance to Bacterial Blight Is Defeated by Induction of the Disease Susceptibility Gene Os-11N3

(2010) G. Antony et al.   PLANT CELL

Differential expression analysis for sequence count data

(2010) Simon Anders et al.   GENOME BIOLOGY

Fast model-based estimation of ancestry in unrelated individuals

(2009) D. H. Alexander et al.   GENOME RESEARCH

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

(2009) Ben Langmead et al.   GENOME BIOLOGY

EnsemblCompara GeneTrees: Complete, duplication-aware phylogenetic trees in vertebrates

(2008) A. J. Vilella et al.   GENOME RESEARCH

A Novel NAC Transcription Factor, IDEF2, That Recognizes the Iron Deficiency-responsive Element 2 Regulates the Genes Involved in Iron Homeostasis in Plants

(2008) Yuko Ogo et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

High-resolution mapping and gene prediction of Xanthomonas Oryzae pv. Oryzae resistance gene Xa7

(2008) Shen Chen et al.   MOLECULAR BREEDING