Protein functional module identification method combining topological features and gene expression data

A collective entity linking algorithm with parallel computing on large-scale knowledge base

(2019) Yingchun Xia et al.   JOURNAL OF SUPERCOMPUTING

Module overlapping structure detection in PPI using an improved link similarity-based Markov clustering algorithm

(2018) L. Gu et al.   NEURAL COMPUTING & APPLICATIONS

A regularized ensemble framework of deep learning for cancer detection from multi-class, imbalanced training data

(2018) Xiaohui Yuan et al.   PATTERN RECOGNITION

Feature selection based on artificial bee colony and gradient boosting decision tree

(2018) Haidi Rao et al.   APPLIED SOFT COMPUTING

A New Method for Predicting Protein Functions From Dynamic Weighted Interactome Networks

(2016) Bihai Zhao et al.   IEEE TRANSACTIONS ON NANOBIOSCIENCE

Using neighborhood cohesiveness to infer interactions between protein domains

(2015) Joan Segura et al.   BIOINFORMATICS

Discrimination of membrane transporter protein types using K-nearest neighbor method derived from the similarity distance of total diversity measure

(2015) Yong-Chun Zuo et al.   Molecular BioSystems

Detecting Protein Complexes Based on Uncertain Graph Model

(2014) Bihai Zhao et al.   IEEE-ACM Transactions on Computational Biology and Bioinformatics

Trust Model in Cloud Computing Environment Based on Fuzzy Theory

(2014) Lichuan Gu et al.   International Journal of Computers Communications & Control

Detecting overlapping protein complexes in protein-protein interaction networks

(2012) Tamás Nepusz et al.   NATURE METHODS

MINE: Module Identification in Networks

(2011) Kahn Rhrissorrakrai et al.   BMC BIOINFORMATICS

Transcriptional Responses of Saccharomyces cerevisiae to Shift from Respiratory and Respirofermentative to Fully Fermentative Metabolism

(2011) Eija Rintala et al.   OMICS-A JOURNAL OF INTEGRATIVE BIOLOGY

Detection of gene pathways with predictive power for breast cancer prognosis

(2010) Shuangge Ma et al.   BMC BIOINFORMATICS

A core-attachment based method to detect protein complexes in PPI networks

(2009) Min Wu et al.   BMC BIOINFORMATICS

Detect overlapping and hierarchical community structure in networks

(2008) Huawei Shen et al.   PHYSICA A-STATISTICAL MECHANICS AND ITS APPLICATIONS