CentromereArchitect: inference and analysis of the architecture of centromeres

The structure, function and evolution of a complete human chromosome 8

(2021) Glennis A. Logsdon et al.   NATURE

TandemTools: mapping long reads and assessing/improving assembly quality in extra-long tandem repeats

(2020) Alla Mikheenko et al.   BIOINFORMATICS

The string decomposition problem and its applications to centromere analysis and assembly

(2020) Tatiana Dvorkina et al.   BIOINFORMATICS

Telomere-to-telomere assembly of a complete human X chromosome

(2020) Karen H. Miga et al.   NATURE

Automated assembly of centromeres from ultra-long error-prone reads

(2020) Andrey V. Bzikadze et al.   NATURE BIOTECHNOLOGY

Centromeric Transcription: A Conserved Swiss-Army Knife

(2020) Ganesan Arunkumar et al.   Genes

Centromere studies in the era of ‘telomere-to-telomere’ genomics

(2020) Karen H. Miga   EXPERIMENTAL CELL RESEARCH

HiCanu: accurate assembly of segmental duplications, satellites, and allelic variants from high-fidelity long reads

(2020) Sergey Nurk et al.   GENOME RESEARCH

Rapid and ongoing evolution of repetitive sequence structures in human centromeres

(2020) Yuta Suzuki et al.   Science Advances

Centromeric Satellite DNAs: Hidden Sequence Variation in the Human Population

(2019) Miga   Genes

Haplotypes spanning centromeric regions reveal persistence of large blocks of archaic DNA

(2019) Sasha A Langley et al.   eLife

Alpha satellite DNA biology: finding function in the recesses of the genome

(2018) Shannon M. McNulty et al.   CHROMOSOME RESEARCH

Satellite DNA evolution: old ideas, new approaches

(2018) Sarah Sander Lower et al.   CURRENT OPINION IN GENETICS & DEVELOPMENT

Heterochromatin-Encoded Satellite RNAs Induce Breast Cancer

(2018) Quan Zhu et al.   MOLECULAR CELL

Repetitive Fragile Sites: Centromere Satellite DNA As a Source of Genome Instability in Human Diseases

(2018) Elizabeth M. Black et al.   Genes

Centromere and Pericentromere Transcription: Roles and Regulation … in Sickness and in Health

(2018) Ksenia Smurova et al.   Frontiers in Genetics

Alpha-CENTAURI: assessing novel centromeric repeat sequence variation with long read sequencing

(2016) Volkan Sevim et al.   BIOINFORMATICS

Centromere reference models for human chromosomes X and Y satellite arrays

(2014) K. H. Miga et al.   GENOME RESEARCH

The UCSC Genome Browser database: 2015 update

(2014) Kate R. Rosenbloom et al.   NUCLEIC ACIDS RESEARCH

Human aneuploidy: mechanisms and new insights into an age-old problem

(2012) So I. Nagaoka et al.   NATURE REVIEWS GENETICS

Fast, scalable generation of high-quality protein multiple sequence alignments using Clustal Omega

(2011) F. Sievers et al.   Molecular Systems Biology

Major Evolutionary Transitions in Centromere Complexity

(2009) Harmit S. Malik et al.   CELL

The Evolutionary Origin of Man Can Be Traced in the Layers of Defunct Ancestral Alpha Satellites Flanking the Active Centromeres of Human Chromosomes

(2009) Valery A. Shepelev et al.   PLoS Genetics