Long Tracts of Guanines Drive Aggregation of RNA G-Quadruplexes in the Presence of Spermine

Tissue-specific changes in the RNA structurome mediate salinity response in Arabidopsis

(2020) David C Tack et al.   RNA

RNA G-Quadruplex Structures Mediate Gene Regulation in Bacteria

(2020) Xiaolong Shao et al.   mBio

RNA-Mediated Feedback Control of Transcriptional Condensates

(2020) Jonathan E. Henninger et al.   CELL

C9orf72 and Triplet Repeat Disorder RNAs: G-quadruplex formation, binding to PRC2 and implications for disease mechanisms

(2019) Xueyin Wang et al.   RNA

G-quadruplex structures trigger RNA phase separation

(2019) Yueying Zhang et al.   NUCLEIC ACIDS RESEARCH

Cellular conditions of weakly chelated magnesium ions strongly promote RNA stability and catalysis

(2018) Ryota Yamagami et al.   Nature Communications

Control of the polyamine biosynthesis pathway by G2-quadruplexes

(2018) Helen Louise Lightfoot et al.   eLife

Characterization of G-Quadruplexes in Chlamydomonas reinhardtii and the Effects of Polyamine and Magnesium Cations on Structure and Stability

(2018) W. Andrew Vinyard et al.   BIOCHEMISTRY

Genome-wide RNA structurome reprogramming by acute heat shock globally regulates mRNA abundance

(2018) Zhao Su et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

In vivo RNA structural probing of uracil and guanine base-pairing by 1-ethyl-3-(3-dimethylaminopropyl)carbodiimide (EDC)

(2018) David Mitchell et al.   RNA

Carbodiimide reagents for the chemical probing of RNA structure in cells

(2018) Peter Y. Wang et al.   RNA

The Stress Granule Transcriptome Reveals Principles of mRNA Accumulation in Stress Granules

(2017) Anthony Khong et al.   MOLECULAR CELL

Structure-seq2: sensitive and accurate genome-wide profiling of RNA structure in vivo

(2017) Laura E. Ritchey et al.   NUCLEIC ACIDS RESEARCH

ALS/FTD-Associated C9ORF72 Repeat RNA Promotes Phase Transitions In Vitro and in Cells

(2017) Marta M. Fay et al.   Cell Reports

Transcriptome analysis of creeping bentgrass exposed to drought stress and polyamine treatment

(2017) Yingmei Ma et al.   PLoS One

Genome-Wide Analysis of RNA Secondary Structure

(2016) Philip C. Bevilacqua et al.   Annual Review of Genetics

Polyamine/Nucleotide Coacervates Provide Strong Compartmentalization of Mg2+, Nucleotides, and RNA

(2016) Erica A. Frankel et al.   LANGMUIR

RNA-Based Coacervates as a Model for Membraneless Organelles: Formation, Properties, and Interfacial Liposome Assembly

(2016) William M. Aumiller et al.   LANGMUIR

rG4-seq reveals widespread formation of G-quadruplex structures in the human transcriptome

(2016) Chun Kit Kwok et al.   NATURE METHODS

Transcriptome-wide interrogation of RNA secondary structure in living cells with icSHAPE

(2016) Ryan A Flynn et al.   Nature Protocols

G-quadruplex prediction inE. coligenome reveals a conserved putative G-quadruplex-Hairpin-Duplex switch

(2016) Oktay I. Kaplan et al.   NUCLEIC ACIDS RESEARCH

RNA G-quadruplexes are globally unfolded in eukaryotic cells and depleted in bacteria

(2016) J. U. Guo et al.   SCIENCE

Principles and Properties of Stress Granules

(2016) David S.W. Protter et al.   TRENDS IN CELL BIOLOGY

Remaining Mysteries of Molecular Biology: The Role of Polyamines in the Cell

(2015) Leonor Miller-Fleming et al.   JOURNAL OF MOLECULAR BIOLOGY

Phase Transition of a Disordered Nuage Protein Generates Environmentally Responsive Membraneless Organelles

(2015) Timothy J. Nott et al.   MOLECULAR CELL

Selective 2′-hydroxyl acylation analyzed by primer extension and mutational profiling (SHAPE-MaP) for direct, versatile and accurate RNA structure analysis

(2015) Matthew J Smola et al.   Nature Protocols

The disordered P granule protein LAF-1 drives phase separation into droplets with tunable viscosity and dynamics

(2015) Shana Elbaum-Garfinkle et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A Matter of Location: Influence of G-Quadruplexes on Escherichia coli Gene Expression

(2014) Isabelle T. Holder et al.   CHEMISTRY & BIOLOGY

Endogenous polyamine function—the RNA perspective

(2014) Helen L. Lightfoot et al.   NUCLEIC ACIDS RESEARCH

Evidence of different G-quadruplex DNA binding with biogenic polyamines probed by electrospray ionization-quadrupole time of flight mass spectrometry, circular dichroism and atomic force microscopy

(2013) Li-Na Wen et al.   BIOCHIMIE

Nonenzymatic Template-Directed RNA Synthesis Inside Model Protocells

(2013) K. Adamala et al.   SCIENCE

Topological Characterization of Nucleic Acid G-Quadruplexes by UV Absorption and Circular Dichroism

(2011) Andreas Ioannis Karsisiotis et al.   ANGEWANDTE CHEMIE-INTERNATIONAL EDITION

A stabilizing and denaturing dual-effect for natural polyamines interacting with G-quadruplexes depending on concentration

(2011) Hongxia Sun et al.   BIOCHIMIE

Orderly Microaggregates of G-/C-Rich Oligonucleotides Associated with Spermine

(2011) Yan Fu et al.   BIOMACROMOLECULES

Coexistence of Two Distinct G-Quadruplex Conformations in the hTERT Promoter

(2010) Kah Wai Lim et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

RNA G-Quadruplexes in the model plant species Arabidopsis thaliana: prevalence and possible functional roles

(2010) Melissa A. Mullen et al.   NUCLEIC ACIDS RESEARCH

Probing tRNA interaction with biogenic polyamines

(2010) A. A. Ouameur et al.   RNA

Circular dichroism and conformational polymorphism of DNA

(2009) J. Kypr et al.   NUCLEIC ACIDS RESEARCH

Riboswitch RNAs: using RNA to sense cellular metabolism

(2008) T. M. Henkin   GENES & DEVELOPMENT