DNA sequence-directed cooperation between nucleoid-associated proteins

Organization of the Escherichia coli Chromosome by a MukBEF Axial Core

(2020) Jarno Mäkelä et al.   MOLECULAR CELL

Direct observation of independently moving replisomes in Escherichia coli

(2020) Aleksandre Japaridze et al.   Nature Communications

Dependence of DNA length on binding affinity between TrpR and trpO of DNA

(2020) Nobuo Shimamoto et al.   Scientific Reports

Cell Boundary Confinement Sets the Size and Position of the E. coli Chromosome

(2019) Fabai Wu et al.   CURRENT BIOLOGY

Fis protein forms DNA topological barriers to confine transcription‐coupled DNA supercoiling in Escherichia coli

(2019) Samantha Dages et al.   FEBS LETTERS

Chromosome organization in bacteria: mechanistic insights into genome structure and function

(2019) Remus T. Dame et al.   NATURE REVIEWS GENETICS

Complex DNA knots detected with a nanopore sensor

(2019) Rajesh Kumar Sharma et al.   Nature Communications

Multiscale Structuring of the E. coli Chromosome by Nucleoid-Associated and Condensin Proteins

(2018) Virginia S. Lioy et al.   CELL

Detection of CRISPR-dCas9 on DNA with Solid-State Nanopores

(2018) Wayne Yang et al.   NANO LETTERS

Spatial organization of DNA sequences directs the assembly of bacterial chromatin by a nucleoid-associated protein

(2017) Aleksandre Japaridze et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Hyperplectonemes: A Higher Order Compact and Dynamic DNA Self-Organization

(2017) Aleksandre Japaridze et al.   NANO LETTERS

Spatial confinement induces hairpins in nicked circular DNA

(2017) Aleksandre Japaridze et al.   NUCLEIC ACIDS RESEARCH

Mechanism of environmentally driven conformational changes that modulate H-NS DNA-bridging activity

(2017) Ramon A van der Valk et al.   eLife

Direct observation of DNA knots using a solid-state nanopore

(2016) Calin Plesa et al.   Nature Nanotechnology

Studying Z-DNA and B- to Z-DNA transitions using a cytosine analogue FRET-pair

(2016) Blaise Dumat et al.   NUCLEIC ACIDS RESEARCH

Genes on a Wire: The Nucleoid-Associated Protein HU Insulates Transcription Units in Escherichia coli

(2016) Michael Berger et al.   Scientific Reports

Data analysis methods for solid-state nanopores

(2015) Calin Plesa et al.   NANOTECHNOLOGY

Bridged filaments of histone-like nucleoid structuring protein pause RNA polymerase and aid termination in bacteria

(2015) Matthew V Kotlajich et al.   eLife

DNA thermodynamics shape chromosome organization and topology

(2013) Andrew A. Travers et al.   BIOCHEMICAL SOCIETY TRANSACTIONS

Four-Dimensional Imaging of E. coli Nucleoid Organization and Dynamics in Living Cells

(2013) Jay K. Fisher et al.   CELL

Targeting Non-B-Form DNA in Living Cells

(2013) Yuhao Du et al.   CHEMICAL RECORD

Gene silencing by H-NS from distal DNA site

(2012) Minsang Shin et al.   MOLECULAR MICROBIOLOGY

Variation of the folding and dynamics of theEscherichia colichromosome with growth conditions

(2012) Nastaran Hadizadeh Yazdi et al.   MOLECULAR MICROBIOLOGY

LeuO is a global regulator of gene expression inSalmonella entericaserovar Typhimurium

(2012) Shane C. Dillon et al.   MOLECULAR MICROBIOLOGY

Complexity of chromatin folding is captured by the strings and binders switch model

(2012) M. Barbieri et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Nucleoprotein filament formation is the structural basis for bacterial protein H-NS gene silencing

(2012) Ci Ji Lim et al.   Scientific Reports

Nucleoid-associated proteins in Crenarchaea

(2011) Rosalie P.C. Driessen et al.   BIOCHEMICAL SOCIETY TRANSACTIONS

Analog regulation of metabolic demand

(2011) Nikolaus Sonnenschein et al.   BMC Systems Biology

Rational Design of an Artificial Genetic Switch: Co-Option of the H-NS-Repressed proU Operon by the VirB Virulence Master Regulator

(2011) K. A. Kane et al.   JOURNAL OF BACTERIOLOGY

Structural basis for recognition of AT-rich DNA by unrelated xenogeneic silencing proteins

(2011) B. R. G. Gordon et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Gene order and chromosome dynamics coordinate spatiotemporal gene expression during the bacterial growth cycle

(2011) P. Sobetzko et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A divalent switch drives H-NS/DNA-binding conformations between stiffening and bridging modes

(2010) Y. Liu et al.   GENES & DEVELOPMENT

The shape of the DNA minor groove directs binding by the DNA-bending protein Fis

(2010) S. Stella et al.   GENES & DEVELOPMENT

Bacterial nucleoid-associated proteins, nucleoid structure and gene expression

(2010) Shane C. Dillon et al.   NATURE REVIEWS MICROBIOLOGY

Direct and indirect effects of H-NS and Fis on global gene expression control in Escherichia coli

(2010) Christina Kahramanoglou et al.   NUCLEIC ACIDS RESEARCH

A Systematic In Vitro Study of Nucleoprotein Complexes Formed by Bacterial Nucleoid-Associated Proteins Revealing Novel Types of DNA Organization

(2009) Sebastian Maurer et al.   JOURNAL OF MOLECULAR BIOLOGY