Transcriptome Analyses Throughout Chili Pepper Fruit Development Reveal Novel Insights into the Domestication Process

Cis and trans-regulatory variation in the domestication of the chili pepper fruit

(2020) Erik Díaz-Valenzuela et al.   MOLECULAR BIOLOGY AND EVOLUTION

Decrease of gene expression diversity during domestication of animals and plants

(2019) Wei Liu et al.   BMC EVOLUTIONARY BIOLOGY

Identification of genes involved in fruit development/ripening in Capsicum and development of functional markers

(2019) Meenakshi Dubey et al.   GENOMICS

Capsicum—An Abbreviated Compendium

(2019) Robert L. Jarret et al.   JOURNAL OF THE AMERICAN SOCIETY FOR HORTICULTURAL SCIENCE

Natural variations in the MYB transcription factor MYB31 determine the evolution of extremely pungent peppers

(2019) Zhangsheng Zhu et al.   NEW PHYTOLOGIST

NormExpression: An R Package to Normalize Gene Expression Data Using Evaluated Methods

(2019) Zhenfeng Wu et al.   Frontiers in Genetics

Jasmonate-Inducible R2R3-MYB Transcription Factor Regulates Capsaicinoid Biosynthesis and Stamen Development in Capsicum

(2019) Binmei Sun et al.   JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY

Placenta, Pericarp, and Seeds of Tabasco Chili Pepper Fruits Show a Contrasting Diversity of Bioactive Metabolites

(2019) Felipe Cervantes-Hernández et al.   Metabolites

Assessment of Capsaicinoid and Capsinoid Accumulation Patterns during Fruit Development in Three Chili Pepper Genotypes (Capsicum spp.) Carrying Pun1 and pAMT Alleles Related to Pungency

(2019) Oreto Fayos et al.   JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY

Comparative Proteomic Analysis Reveals Key Proteins Linked to the Accumulation of Soluble Sugars and Organic Acids in the Mature Fruits of the Wild Malus Species

(2019) Baiquan Ma et al.   Plants-Basel

Genomic Evidence for Complex Domestication History of the Cultivated Tomato in Latin America

(2019) Hamid Razifard et al.   MOLECULAR BIOLOGY AND EVOLUTION

Genomewide genotyping of a novel Mexican Chile Pepper collection illuminates the history of landrace differentiation after Capsicum annuum L. domestication

(2018) Nathan Taitano et al.   Evolutionary Applications

MUN (MERISTEM UNSTRUCTURED ), encoding a SPC24 homolog of NDC80 kinetochore complex, affects development through cell division in Arabidopsis thaliana

(2018) Jinwoo Shin et al.   PLANT JOURNAL

Differential transcriptome patterns associated with early seedling development in a wild and a domesticated common bean ( Phaseolus vulgaris L.) accession

(2018) Jugpreet Singh et al.   PLANT SCIENCE

Reference quality assembly of the 3.5-Gb genome of Capsicum annuum from a single linked-read library

(2018) Amanda M. Hulse-Kemp et al.   Horticulture Research

Proteomic analysis reveals strong mitochondrial involvement in cytoplasmic male sterility of pepper ( Capsicum annuum L.)

(2017) Jinju Guo et al.   Journal of Proteomics

Domestication rewired gene expression and nucleotide diversity patterns in tomato

(2017) Christopher Sauvage et al.   PLANT JOURNAL

An R2R3-MYB Transcription Factor Regulates Capsaicinoid Biosynthesis

(2017) Magda L. Arce-Rodríguez et al.   PLANT PHYSIOLOGY

Comparative transcriptome analysis of the different tissues between the cultivated and wild tomato

(2017) Qi Dai et al.   PLoS One

Wild Pepper L. var. : Taxonomy, Plant Morphology, Distribution, Genetic Diversity, Genome Sequencing, and Phytochemical Compounds

(2016) Corina Hayano-Kanashiro et al.   CROP SCIENCE

Trypanosome outer kinetochore proteins suggest conservation of chromosome segregation machinery across eukaryotes

(2016) Simon D’Archivio et al.   JOURNAL OF CELL BIOLOGY

Complete genome sequencing and analysis of Capsicum annuum varieties

(2016) Yul-Kyun Ahn et al.   MOLECULAR BREEDING

Difference in capsaicinoid biosynthesis gene expression in the pericarp reveals elevation of capsaicinoid contents in chili peppers (Capsicum chinense)

(2016) Yoshiyuki Tanaka et al.   PLANT CELL REPORTS

Cell cycle-regulated PLEIADE/AtMAP65-3 links membrane and microtubule dynamics during plant cytokinesis

(2016) Alexander Steiner et al.   PLANT JOURNAL

A single generation of domestication heritably alters the expression of hundreds of genes

(2016) Mark R. Christie et al.   Nature Communications

TDM1 Regulation Determines the Number of Meiotic Divisions

(2016) Marta Cifuentes et al.   PLoS Genetics

Hepatic Transcriptome Responses of Domesticated and Wild Turkey Embryos to Aflatoxin B1

(2016) Melissa Monson et al.   Toxins

The relationship between red fruit colour formation and key genes of capsanthin biosynthesis pathway in Capsicum annuum

(2015) S. -L. Tian et al.   BIOLOGIA PLANTARUM

Transcriptional repression by MYB3R proteins regulates plant organ growth

(2015) K. Kobayashi et al.   EMBO JOURNAL

Metabolomic Characterization of Hot Pepper (Capsicum annuum “CM334”) during Fruit Development

(2015) Yu Kyung Jang et al.   JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY

Fruit growth-related genes in tomato

(2015) Lamia Azzi et al.   JOURNAL OF EXPERIMENTAL BOTANY

Domestication selected for deceleration of the circadian clock in cultivated tomato

(2015) Niels A Müller et al.   NATURE GENETICS

Core questions in domestication research

(2015) Melinda A. Zeder   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Predominant role of the l-galactose pathway in l-ascorbic acid biosynthesis in fruits and leaves of the Capsicum annuum L. chili pepper

(2015) María del Rocío Gómez-García et al.   Brazilian Journal of Botany

Dynamics in Transcriptomics: Advancements in RNA-seq Time Course and Downstream Analysis

(2015) Daniel Spies et al.   Computational and Structural Biotechnology Journal

New insights into domestication of carrot from root transcriptome analyses

(2014) Jun Rong et al.   BMC GENOMICS

Dynamics of the chili pepper transcriptome during fruit development

(2014) Luis A Martínez-López et al.   BMC GENOMICS

Morphological and genetic relationships between wild and domesticated forms of peppers (Capsicum frutescens L. and C. chinense Jacquin)

(2014) S.I.C. Carvalho et al.   GENETICS AND MOLECULAR RESEARCH

Genome sequence of the hot pepper provides insights into the evolution of pungency in Capsicum species

(2014) Seungill Kim et al.   NATURE GENETICS

Decreased Nucleotide and Expression Diversity and Modified Coexpression Patterns Characterize Domestication in the Common Bean

(2014) E. Bellucci et al.   PLANT CELL

Transcriptome comparison reveals the patterns of selection in domesticated and wild ramie (Boehmeria nivea L. Gaud)

(2014) Touming Liu et al.   PLANT MOLECULAR BIOLOGY

Multiple lines of evidence for the origin of domesticated chili pepper, Capsicum annuum, in Mexico

(2014) K. H. Kraft et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Whole-genome sequencing of cultivated and wild peppers provides insights into Capsicum domestication and specialization

(2014) C. Qin et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Evolution of a hot genome

(2014) V. A. Albert et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A genome-wide scan for signatures of differential artificial selection in ten cattle breeds

(2013) Sophie Rothammer et al.   BMC GENOMICS

Molecular footprints of domestication and improvement in soybean revealed by whole genome re-sequencing

(2013) Ying-hui Li et al.   BMC GENOMICS

Genes that influence yield in tomato

(2013) Tohru Ariizumi et al.   BREEDING SCIENCE

SPIRAL2 Determines Plant Microtubule Organization by Modulating Microtubule Severing

(2013) Raymond Wightman et al.   CURRENT BIOLOGY

Biochemistry and Molecular Biology of Carotenoid Biosynthesis in Chili Peppers (Capsicum spp.)

(2013) María Gómez-García et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Overexpressed TPX2 causes ectopic formation of microtubular arrays in the nuclei of acentrosomal plant cells

(2013) Beáta Petrovská et al.   JOURNAL OF EXPERIMENTAL BOTANY

Microarray analysis of gene expression patterns during fruit development in European pear (Pyrus communis)

(2013) Kenji Nashima et al.   SCIENTIA HORTICULTURAE

Comparative population genomics of maize domestication and improvement

(2012) Matthew B Hufford et al.   NATURE GENETICS

Footprints of natural and artificial selection for photoperiod pathway genes in Oryza

(2012) Chao-Li Huang et al.   PLANT JOURNAL

Integrative Comparative Analyses of Transcript and Metabolite Profiles from Pepper and Tomato Ripening and Development Stages Uncovers Species-Specific Patterns of Network Regulatory Behavior

(2012) S. Osorio et al.   PLANT PHYSIOLOGY

A Comparison of Brain Gene Expression Levels in Domesticated and Wild Animals

(2012) Frank W. Albert et al.   PLoS Genetics

Autophagy: Renovation of Cells and Tissues

(2011) Noboru Mizushima et al.   CELL

Developmental regulation of CYCA2s contributes to tissue-specific proliferation inArabidopsis

(2011) Steffen Vanneste et al.   EMBO JOURNAL

Identification of a functional transposon insertion in the maize domestication gene tb1

(2011) Anthony Studer et al.   NATURE GENETICS

Cell number counts – The fw2.2 and CNR genes and implications for controlling plant fruit and organ size

(2011) Mei Guo et al.   PLANT SCIENCE

Difference in the polysomaty degree during fruit development among plants with different ploidy levels produced by artificial chromosome doubling of a pepper (Capsicum annuum) cultivar ‘Shishitou No. 562’

(2011) Daisuke Ogawa et al.   SCIENTIA HORTICULTURAE

Within and between Whorls: Comparative Transcriptional Profiling of Aquilegia and Arabidopsis

(2010) Claudia Voelckel et al.   PLoS One

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

Chilli peppers — A review on tissue culture and transgenesis

(2009) S.L. Kothari et al.   BIOTECHNOLOGY ADVANCES

The life and miracles of kinetochores

(2009) Stefano Santaguida et al.   EMBO JOURNAL

ENDOSPERM DEFECTIVE1 Is a Novel Microtubule-Associated Protein Essential for Seed Development in Arabidopsis

(2009) C. Pignocchi et al.   PLANT CELL

Tracking footprints of maize domestication and evidence for a massive selective sweep on chromosome 10

(2009) F. Tian et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Global analysis of gene expression in cotton fibers from wild and domesticatedGossypium barbadense

(2008) Bhupendra Chaudhary et al.   EVOLUTION & DEVELOPMENT

Arabidopsis SPIRAL2 promotes uninterrupted microtubule growth by suppressing the pause state of microtubule dynamics

(2008) M. Yao et al.   JOURNAL OF CELL SCIENCE

A Genomic Scan for Selection Reveals Candidates for Genes Involved in the Evolution of Cultivated Sunflower (Helianthus annuus)

(2008) M. A. Chapman et al.   PLANT CELL

The Plant TPX2 Protein Regulates Prospindle Assembly before Nuclear Envelope Breakdown

(2008) J. W. Vos et al.   PLANT CELL