In-Situ Metatranscriptomic Analyses Reveal the Metabolic Flexibility of the Thermophilic Anoxygenic Photosynthetic Bacterium Chloroflexus aggregans in a Hot Spring Cyanobacteria-Dominated Microbial Mat

“Candidatus Thermonerobacter thiotrophicus,” A Non-phototrophic Member of the Bacteroidetes/Chlorobi With Dissimilatory Sulfur Metabolism in Hot Spring Mat Communities

(2019) Vera Thiel et al.   Frontiers in Microbiology

Symbiotic Growth of a Thermophilic Sulfide-Oxidizing Photoautotroph and an Elemental Sulfur-Disproportionating Chemolithoautotroph and Cooperative Dissimilatory Oxidation of Sulfide to Sulfate

(2019) Shigeru Kawai et al.   Frontiers in Microbiology

CDD/SPARCLE: the conserved domain database in 2020

(2019) Shennan Lu et al.   NUCLEIC ACIDS RESEARCH

Convergent evolution of unusual complex I homologs with increased proton pumping capacity: energetic and ecological implications

(2018) Grayson L. Chadwick et al.   ISME Journal

Nitrogen Fixation in Thermophilic Chemosynthetic Microbial Communities Depending on Hydrogen, Sulfate, and Carbon Dioxide

(2018) Arisa Nishihara et al.   MICROBES AND ENVIRONMENTS

Chloroflexus islandicus sp. nov., a thermophilic filamentous anoxygenic phototrophic bacterium from a geyser

(2017)   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

In SituHydrogen Dynamics in a Hot Spring Microbial Mat during a Diel Cycle

(2016) Niels Peter Revsbech et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

In Situ Gene Expression Responsible for Sulfide Oxidation and CO2 Fixation of an Uncultured Large Sausage-Shaped Aquificae Bacterium in a Sulfidic Hot Spring

(2016) Satoshi Tamazawa et al.   MICROBES AND ENVIRONMENTS

The Dark Side of the Mushroom Spring Microbial Mat: Life in the Shadow of Chlorophototrophs. I. Microbial Diversity Based on 16S rRNA Gene Amplicons and Metagenomic Sequencing

(2016) Vera Thiel et al.   Frontiers in Microbiology

Diel metabolomics analysis of a hot spring chlorophototrophic microbial mat leads to new hypotheses of community member metabolisms

(2015) Young-Mo Kim et al.   Frontiers in Microbiology

Changes in gene expression of Prymnesium parvum induced by nitrogen and phosphorus limitation

(2015) Zhenfeng Liu et al.   Frontiers in Microbiology

EDGE-pro: Estimated Degree of Gene Expression in Prokaryotic Genomes

(2013) Tanja Magoc et al.   Evolutionary Bioinformatics

Temporal metatranscriptomic patterning in phototrophic Chloroflexi inhabiting a microbial mat in a geothermal spring

(2013) Christian G Klatt et al.   ISME Journal

Why do bacteria use so many enzymes to scavenge hydrogen peroxide?

(2012) Surabhi Mishra et al.   ARCHIVES OF BIOCHEMISTRY AND BIOPHYSICS

Production and Consumption of Hydrogen in Hot Spring Microbial Mats Dominated by a Filamentous Anoxygenic Photosynthetic Bacterium

(2012) Hiroyo Otaki et al.   MICROBES AND ENVIRONMENTS

Diversification of Bacterial Community Composition along a Temperature Gradient at a Thermal Spring

(2012) R. Craig Everroad et al.   MICROBES AND ENVIRONMENTS

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

Comparison of Chloroflexus aurantiacus strain J-10-fl proteomes of cells grown chemoheterotrophically and photoheterotrophically

(2012) Li Cao et al.   PHOTOSYNTHESIS RESEARCH

Complete Genome of Ignavibacterium album, a Metabolically Versatile, Flagellated, Facultative Anaerobe from the Phylum Chlorobi

(2012) Zhenfeng Liu et al.   Frontiers in Microbiology

Coassimilation of Organic Substrates via the Autotrophic 3-Hydroxypropionate Bi-Cycle in Chloroflexus aurantiacus

(2011) Jan Zarzycki et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Complete genome sequence of the filamentous anoxygenic phototrophic bacterium Chloroflexus aurantiacus

(2011) Kuo-Hsiang Tang et al.   BMC GENOMICS

Anaplerotic Function of Phosphoenolpyruvate Carboxylase in Bradyrhizobium japonicum USDA110

(2011) Michael F. Dunn   CURRENT MICROBIOLOGY

Identification of the Bacteriochlorophylls, Carotenoids, Quinones, Lipids, and Hopanoids of "Candidatus Chloracidobacterium thermophilum"

(2011) A. M. Garcia Costas et al.   JOURNAL OF BACTERIOLOGY

Sulfur-metabolizing bacterial populations in microbial mats of the Nakabusa hot spring, Japan

(2011) Kyoko Kubo et al.   SYSTEMATIC AND APPLIED MICROBIOLOGY

Mechanisms and Evolution of Oxidative Sulfur Metabolism in Green Sulfur Bacteria

(2011) Lea H. Gregersen et al.   Frontiers in Microbiology

Beyond the Calvin Cycle: Autotrophic Carbon Fixation in the Ocean

(2010) Michael Hügler et al.   Annual Review of Marine Science

Structural Analysis of Alternative Complex III in the Photosynthetic Electron Transfer Chain ofChloroflexus aurantiacus

(2010) Xinliu Gao et al.   BIOCHEMISTRY

Cultivation and Genomic, Nutritional, and Lipid Biomarker Characterization of Roseiflexus Strains Closely Related to Predominant In Situ Populations Inhabiting Yellowstone Hot Spring Microbial Mats

(2010) M. T. J. van der Meer et al.   JOURNAL OF BACTERIOLOGY

In Situ Biomass Production of a Hot Spring Sulfur-Turf Microbial Mat

(2010) Hiroyuki Kimura et al.   MICROBES AND ENVIRONMENTS

The chlorosome: a prototype for efficient light harvesting in photosynthesis

(2010) Gert T. Oostergetel et al.   PHOTOSYNTHESIS RESEARCH

Characterization of a blue-copper protein, auracyanin, of the filamentous anoxygenic phototrophic bacterium Roseiflexus castenholzii

(2009) Yusuke Tsukatani et al.   ARCHIVES OF BIOCHEMISTRY AND BIOPHYSICS

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

Enzymatic activity of the alternative complex III as a menaquinol:auracyanin oxidoreductase in the electron transfer chain ofChloroflexus aurantiacus

(2009) Xinliu Gao et al.   FEBS LETTERS

Role of the AcsF Protein in Chloroflexus aurantiacus

(2009) K.-H. Tang et al.   JOURNAL OF BACTERIOLOGY

The crystal structure of auracyanin A at 1.85 Å resolution: the structures and functions of auracyanins A and B, two almost identical “blue” copper proteins, in the photosynthetic bacterium Chloroflexus aurantiacus

(2009) Mihwa Lee et al.   JOURNAL OF BIOLOGICAL INORGANIC CHEMISTRY

Complete Genome Sequence of the Aerobic CO-Oxidizing Thermophile Thermomicrobium roseum

(2009) Dongying Wu et al.   PLoS One

The structure of Aquifex aeolicus sulfide:quinone oxidoreductase, a basis to understand sulfide detoxification and respiration

(2009) M. Marcia et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Purification, characterization and crystallization of menaquinol:fumarate oxidoreductase from the green filamentous photosynthetic bacterium Chloroflexus aurantiacus

(2008) Yueyong Xin et al.   BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS

Regulation of nif gene expression and the energetics of N2 fixation over the diel cycle in a hot spring microbial mat

(2008) Anne-Soisig Steunou et al.   ISME Journal