标题
Balancing selection maintains hyper-divergent haplotypes in Caenorhabditis elegans
作者
关键词
-
出版物
Nature Ecology & Evolution
Volume -, Issue -, Pages -
出版商
Springer Science and Business Media LLC
发表日期
2021-04-06
DOI
10.1038/s41559-021-01435-x
参考文献
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注意:仅列出部分参考文献,下载原文获取全部文献信息。- The Genome of Caenorhabditis bovis
- (2020) Lewis Stevens et al. CURRENT BIOLOGY
- BetaScan2: Standardized Statistics to Detect Balancing Selection Utilizing Substitution Data
- (2020) Katherine M Siewert et al. Genome Biology and Evolution
- IQ-TREE 2: New Models and Efficient Methods for Phylogenetic Inference in the Genomic Era
- (2020) Bui Quang Minh et al. MOLECULAR BIOLOGY AND EVOLUTION
- Pan-Genome of Wild and Cultivated Soybeans
- (2020) Yucheng Liu et al. CELL
- Massive haplotypes underlie ecotypic differentiation in sunflowers
- (2020) Marco Todesco et al. NATURE
- Adaptive Introgression: An Untapped Evolutionary Mechanism for Crop Adaptation
- (2019) Concetta Burgarella et al. Frontiers in Plant Science
- Long-read sequencing reveals intra-species tolerance of substantial structural variations and new subtelomere formation in C. elegans
- (2019) Chuna Kim et al. GENOME RESEARCH
- Assembly of long, error-prone reads using repeat graphs
- (2019) Mikhail Kolmogorov et al. NATURE BIOTECHNOLOGY
- Long-term balancing selection drives evolution of immunity genes in Capsella
- (2019) Daniel Koenig et al. eLife
- Reproductive transitions in plants and animals: selfing syndrome, sexual selection, and speciation
- (2019) Asher D. Cutter NEW PHYTOLOGIST
- Population Selection and Sequencing of Caenorhabditis elegans Wild Isolates Identifies a Region on Chromosome III Affecting Starvation Resistance
- (2019) Amy K. Webster et al. G3-Genes Genomes Genetics
- Selection and gene flow shape niche-associated variation in pheromone response
- (2019) Daehan Lee et al. Nature Ecology & Evolution
- Males, Outcrossing, and Sexual Selection in Caenorhabditis Nematodes
- (2019) Asher D. Cutter et al. GENETICS
- WormCat: An Online Tool for Annotation and Visualization of Caenorhabditis elegans Genome-Scale Data
- (2019) Amy D. Holdorf et al. GENETICS
- Fast and accurate long-read assembly with wtdbg2
- (2019) Jue Ruan et al. NATURE METHODS
- Deep sampling of Hawaiian Caenorhabditis elegans reveals high genetic diversity and admixture with global populations
- (2019) Tim A Crombie et al. eLife
- Minimap2: pairwise alignment for nucleotide sequences
- (2018) Heng Li BIOINFORMATICS
- Rapid genome shrinkage in a self-fertile nematode reveals sperm competition proteins
- (2018) Da Yin et al. SCIENCE
- Biology and genome of a newly discovered sibling species of Caenorhabditis elegans
- (2018) Natsumi Kanzaki et al. Nature Communications
- PopLDdecay: a fast and effective tool for linkage disequilibrium decay analysis based on variant call format files
- (2018) Chi Zhang et al. BIOINFORMATICS
- The Local Coexistence Pattern of Selfing Genotypes inCaenorhabditis elegansNatural Metapopulations
- (2017) Aurélien Richaud et al. GENETICS
- The Natural Biotic Environment ofCaenorhabditis elegans
- (2017) Hinrich Schulenburg et al. GENETICS
- Canu: scalable and accurate long-read assembly via adaptivek-mer weighting and repeat separation
- (2017) Sergey Koren et al. GENOME RESEARCH
- Detecting Long-Term Balancing Selection Using Allele Frequency Correlation
- (2017) Katherine M. Siewert et al. MOLECULAR BIOLOGY AND EVOLUTION
- ModelFinder: fast model selection for accurate phylogenetic estimates
- (2017) Subha Kalyaanamoorthy et al. NATURE METHODS
- WormBase 2017: molting into a new stage
- (2017) Raymond Y N Lee et al. NUCLEIC ACIDS RESEARCH
- A maternal-effect selfish genetic element in Caenorhabditis elegans
- (2017) Eyal Ben-David et al. SCIENCE
- Natural Genetic Variation in the Caenorhabditis elegans Response to Pseudomonas aeruginosa
- (2017) Natalia Martin et al. G3-Genes Genomes Genetics
- The Local Coexistence Pattern of Selfing Genotypes inCaenorhabditis elegansNatural Metapopulations
- (2017) Aurélien Richaud et al. GENETICS
- The Natural Biotic Environment ofCaenorhabditis elegans
- (2017) Hinrich Schulenburg et al. GENETICS
- Ephemeral-habitat colonization and neotropical species richness of Caenorhabditis nematodes
- (2017) Céline Ferrari et al. BMC ECOLOGY
- The Genetic Basis of Natural Variation in Caenorhabditis elegans Telomere Length
- (2016) Daniel E. Cook et al. GENETICS
- Balancing selection shapes density-dependent foraging behaviour
- (2016) Joshua S. Greene et al. NATURE
- CeNDR, theCaenorhabditis elegansnatural diversity resource
- (2016) Daniel E. Cook et al. NUCLEIC ACIDS RESEARCH
- ggtree: anrpackage for visualization and annotation of phylogenetic trees with their covariates and other associated data
- (2016) Guangchuang Yu et al. Methods in Ecology and Evolution
- Regulatory changes in two chemoreceptor genes contribute to a Caenorhabditis elegans QTL for foraging behavior
- (2016) Joshua S Greene et al. eLife
- The Genetic Basis of Natural Variation in Caenorhabditis elegans Telomere Length
- (2016) Daniel E. Cook et al. GENETICS
- BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs
- (2015) Felipe A. Simão et al. BIOINFORMATICS
- Remarkably Divergent Regions Punctuate the Genome Assembly of the Caenorhabditis elegans Hawaiian Strain CB4856
- (2015) Owen A. Thompson et al. GENETICS
- Full-genome evolutionary histories of selfing, splitting, and selection inCaenorhabditis
- (2015) Cristel G. Thomas et al. GENOME RESEARCH
- The Pfam protein families database: towards a more sustainable future
- (2015) Robert D. Finn et al. NUCLEIC ACIDS RESEARCH
- A Wild C. Elegans Strain Has Enhanced Epithelial Immunity to a Natural Microsporidian Parasite
- (2015) Keir M. Balla et al. PLoS Pathogens
- Remarkably Divergent Regions Punctuate the Genome Assembly of the Caenorhabditis elegans Hawaiian Strain CB4856
- (2015) Owen A. Thompson et al. GENETICS
- Repbase Update, a database of repetitive elements in eukaryotic genomes
- (2015) Weidong Bao et al. Mobile DNA
- Trimmomatic: a flexible trimmer for Illumina sequence data
- (2014) Anthony M. Bolger et al. BIOINFORMATICS
- InterProScan 5: genome-scale protein function classification
- (2014) P. Jones et al. BIOINFORMATICS
- Fast and sensitive protein alignment using DIAMOND
- (2014) Benjamin Buchfink et al. NATURE METHODS
- Pilon: An Integrated Tool for Comprehensive Microbial Variant Detection and Genome Assembly Improvement
- (2014) Bruce J. Walker et al. PLoS One
- A Variant in the Neuropeptide Receptor npr-1 is a Major Determinant of Caenorhabditis elegans Growth and Physiology
- (2014) Erik C. Andersen et al. PLoS Genetics
- Ubiquitin-Mediated Response to Microsporidia and Virus Infection in C. elegans
- (2014) Malina A. Bakowski et al. PLoS Pathogens
- Detecting Identity by Descent and Estimating Genotype Error Rates in Sequence Data
- (2013) Brian L. Browning et al. AMERICAN JOURNAL OF HUMAN GENETICS
- OUTBREEDING DEPRESSION WITH LOW GENETIC VARIATION IN SELFINGCAENORHABDITISNEMATODES
- (2013) Clotilde Gimond et al. EVOLUTION
- Genomic signatures of selection at linked sites: unifying the disparity among species
- (2013) Asher D. Cutter et al. NATURE REVIEWS GENETICS
- Molecular hyperdiversity defines populations of the nematode Caenorhabditis brenneri
- (2013) A. Dey et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Multiple Instances of Ancient Balancing Selection Shared Between Humans and Chimpanzees
- (2013) E. M. Leffler et al. SCIENCE
- Genomic Identification of Founding Haplotypes Reveals the History of the Selfing Species Capsella rubella
- (2013) Yaniv Brandvain et al. PLoS Genetics
- A deletion polymorphism in the Caenorhabditis elegans RIG-I homolog disables viral RNA dicing and antiviral immunity
- (2013) Alyson Ashe et al. eLife
- A high-performance computing toolset for relatedness and principal component analysis of SNP data
- (2012) X. Zheng et al. BIOINFORMATICS
- Population dynamics and habitat sharing of natural populations of Caenorhabditis elegans and C. briggsae
- (2012) Marie-Anne Félix et al. BMC BIOLOGY
- A program for annotating and predicting the effects of single nucleotide polymorphisms, SnpEff
- (2012) Pablo Cingolani et al. FLY
- Genomic Variation in Natural Populations of Drosophila melanogaster
- (2012) C. H. Langley et al. GENETICS
- Chromosome-scale selective sweeps shape Caenorhabditis elegans genomic diversity
- (2012) Erik C Andersen et al. NATURE GENETICS
- clusterProfiler: an R Package for Comparing Biological Themes Among Gene Clusters
- (2012) Guangchuang Yu et al. OMICS-A JOURNAL OF INTEGRATIVE BIOLOGY
- Natural Variation in a Chloride Channel Subunit Confers Avermectin Resistance in C. elegans
- (2012) R. Ghosh et al. SCIENCE
- Population Genomic Scan for Candidate Signatures of Balancing Selection to Guide Antigen Characterization in Malaria Parasites
- (2012) Alfred Amambua-Ngwa et al. PLoS Genetics
- A statistical framework for SNP calling, mutation discovery, association mapping and population genetical parameter estimation from sequencing data
- (2011) H. Li BIOINFORMATICS
- A phylogeny and molecular barcodes for Caenorhabditis, with numerous new species from rotting fruits
- (2011) Karin C Kiontke et al. BMC EVOLUTIONARY BIOLOGY
- Natural polymorphisms in C. elegans HECW-1 E3 ligase affect pathogen avoidance behaviour
- (2011) Howard C. Chang et al. NATURE
- Integrative genomics viewer
- (2011) James T Robinson et al. NATURE BIOTECHNOLOGY
- Natural and Experimental Infection of Caenorhabditis Nematodes by Novel Viruses Related to Nodaviruses
- (2011) Marie-Anne Félix et al. PLOS BIOLOGY
- phangorn: phylogenetic analysis in R
- (2010) Klaus Peter Schliep BIOINFORMATICS
- BEDTools: a flexible suite of utilities for comparing genomic features
- (2010) Aaron R. Quinlan et al. BIOINFORMATICS
- Selection at Linked Sites Shapes Heritable Phenotypic Variation in C. elegans
- (2010) M. V. Rockman et al. SCIENCE
- The Sequence Alignment/Map format and SAMtools
- (2009) H. Li et al. BIOINFORMATICS
- Fast and accurate short read alignment with Burrows-Wheeler transform
- (2009) H. Li et al. BIOINFORMATICS
- BLAST+: architecture and applications
- (2009) Christiam Camacho et al. BMC BIOINFORMATICS
- Targets of Balancing Selection in the Human Genome
- (2009) A. M. Andres et al. MOLECULAR BIOLOGY AND EVOLUTION
- Fast Statistical Alignment
- (2009) Robert K. Bradley et al. PLoS Computational Biology
- Recombinational Landscape and Population Genomics of Caenorhabditis elegans
- (2009) Matthew V. Rockman et al. PLoS Genetics
- Using native and syntenically mapped cDNA alignments to improve de novo gene finding
- (2008) Mario Stanke et al. BIOINFORMATICS
- Patterns of Molecular Evolution in Caenorhabditis Preclude Ancient Origins of Selfing
- (2008) A. D. Cutter et al. GENETICS
- Specificity of the innate immune system and diversity of C-type lectin domain (CTLD) proteins in the nematode Caenorhabditis elegans
- (2008) Hinrich Schulenburg et al. IMMUNOBIOLOGY
- Widespread Genetic Incompatibility in C. Elegans Maintained by Balancing Selection
- (2008) H. S. Seidel et al. SCIENCE
- Microsporidia Are Natural Intracellular Parasites of the Nematode Caenorhabditis elegans
- (2008) Emily R Troemel et al. PLOS BIOLOGY
- Adaptation from standing genetic variation
- (2007) R BARRETT et al. TRENDS IN ECOLOGY & EVOLUTION
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