Comparative Transcriptomic Analysis of the Hematopoietic System between Human and Mouse by Single Cell RNA Sequencing

Construction of a human cell landscape at single-cell level

(2020) Xiaoping Han et al.   NATURE

Single-Cell RNA Sequencing of Human, Macaque, and Mouse Testes Uncovers Conserved and Divergent Features of Mammalian Spermatogenesis

(2020) Adrienne Niederriter Shami et al.   DEVELOPMENTAL CELL

Cross-species analysis of enhancer logic using deep learning

(2020) Liesbeth Minnoye et al.   GENOME RESEARCH

Understanding Normal and Malignant Human Hematopoiesis Using Next-Generation Humanized Mice

(2020) Yoriko Saito et al.   TRENDS IN IMMUNOLOGY

Sequencing of RNA in single cells reveals a distinct transcriptome signature of hematopoiesis in GATA2 deficiency

(2020) Zhijie Wu et al.   Blood Advances

Network Approaches for Dissecting the Immune System

(2020) Hao Shi et al.   iScience

MEIS1 promotes expression of stem cell markers in esophageal squamous cell carcinoma

(2020) Selma Zargari et al.   BMC CANCER

Conventional Co-Housing Modulates Murine Gut Microbiota and Hematopoietic Gene Expression

(2020) Jichun Chen et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Comprehensive network modeling from single cell RNA sequencing of human and mouse reveals well conserved transcription regulation of hematopoiesis

(2020) Shouguo Gao et al.   BMC GENOMICS

Integrative Single-Cell RNA-Seq and ATAC-Seq Analysis of Human Developmental Hematopoiesis

(2020) Anna Maria Ranzoni et al.   Cell Stem Cell

Characterization of cell fate probabilities in single-cell data with Palantir

(2019) Manu Setty et al.   NATURE BIOTECHNOLOGY

A comparison of single-cell trajectory inference methods

(2019) Wouter Saelens et al.   NATURE BIOTECHNOLOGY

cisTopic: cis-regulatory topic modeling on single-cell ATAC-seq data

(2019) Carmen Bravo González-Blas et al.   NATURE METHODS

Single-Cell Transcriptomic Map of the Human and Mouse Bladders

(2019) Zhenyuan Yu et al.   JOURNAL OF THE AMERICAN SOCIETY OF NEPHROLOGY

Conserved cell types with divergent features in human versus mouse cortex

(2019) Rebecca D. Hodge et al.   NATURE

Integrated Single-Cell Analysis Maps the Continuous Regulatory Landscape of Human Hematopoietic Differentiation

(2018) Jason D. Buenrostro et al.   CELL

Integrating single-cell transcriptomic data across different conditions, technologies, and species

(2018) Andrew Butler et al.   NATURE BIOTECHNOLOGY

scmap: projection of single-cell RNA-seq data across data sets

(2018) Vladimir Yu Kiselev et al.   NATURE METHODS

Analysis of LncRNA expression in cell differentiation

(2018) Qin Yang et al.   RNA Biology

Comparative transcriptomic analysis of hematopoietic system between human and mouse by Microwell-seq

(2018) Shujing Lai et al.   Cell Discovery

Progression from the Common Lymphoid Progenitor to B/Myeloid PreproB and ProB Precursors during B Lymphopoiesis Requires C/EBPα

(2018) Hong Guo et al.   JOURNAL OF IMMUNOLOGY

Joint profiling of chromatin accessibility and gene expression in thousands of single cells

(2018) Junyue Cao et al.   SCIENCE

The Human Cell Atlas: from vision to reality

(2017) Orit Rozenblatt-Rosen et al.   NATURE

SCENIC: single-cell regulatory network inference and clustering

(2017) Sara Aibar et al.   NATURE METHODS

Single-cell mRNA quantification and differential analysis with Census

(2017) Xiaojie Qiu et al.   NATURE METHODS

Reversed graph embedding resolves complex single-cell trajectories

(2017) Xiaojie Qiu et al.   NATURE METHODS

A single-cell resolution map of mouse hematopoietic stem and progenitor cell differentiation

(2016) S. Nestorowa et al.   BLOOD

The expression and functional roles of microRNAs in stem cell differentiation

(2016) Jiwon Shim et al.   BMB Reports

Expression patterns of the activator protein-1 (AP-1) family members in lymphoid neoplasms

(2016) Alexandra Papoudou-Bai et al.   CLINICAL AND EXPERIMENTAL MEDICINE

The AP-1 transcription factor JunB is essential for multiple myeloma cell proliferation and drug resistance in the bone marrow microenvironment

(2016) F Fan et al.   LEUKEMIA

Early myeloid lineage choice is not initiated by random PU.1 to GATA1 protein ratios

(2016) Philipp S. Hoppe et al.   NATURE

A Single-Cell Transcriptomic Map of the Human and Mouse Pancreas Reveals Inter- and Intra-cell Population Structure

(2016) Maayan Baron et al.   Cell Systems

Distinct routes of lineage development reshape the human blood hierarchy across ontogeny

(2015) F. Notta et al.   SCIENCE

SINCERA: A Pipeline for Single-Cell RNA-Seq Profiling Analysis

(2015) Minzhe Guo et al.   PLoS Computational Biology

Reprogramming human endothelial cells to haematopoietic cells requires vascular induction

(2014) Vladislav M. Sandler et al.   NATURE

InParanoid 8: orthology analysis between 273 proteomes, mostly eukaryotic

(2014) Erik L.L. Sonnhammer et al.   NUCLEIC ACIDS RESEARCH

GATA factor switching from GATA2 to GATA1 contributes to erythroid differentiation

(2013) Mikiko Suzuki et al.   GENES TO CELLS

Role of Macrophages in the Pathogenesis of Atopic Dermatitis

(2013) Sadaf Kasraie et al.   MEDIATORS OF INFLAMMATION

The transcriptional architecture of early human hematopoiesis identifies multilevel control of lymphoid commitment

(2013) Elisa Laurenti et al.   NATURE IMMUNOLOGY

Conservation and divergence in the transcriptional programs of the human and mouse immune systems

(2013) T. Shay et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Meis1 preserves hematopoietic stem cells in mice by limiting oxidative stress

(2012) Z. Unnisa et al.   BLOOD

Hematopoiesis: A Human Perspective

(2012) Sergei Doulatov et al.   Cell Stem Cell

YBX1 expression and function in early hematopoiesis and leukemic cells

(2011) Jasjeet Bhullar et al.   IMMUNOGENETICS

Isolation of Single Human Hematopoietic Stem Cells Capable of Long-Term Multilineage Engraftment

(2011) F. Notta et al.   SCIENCE