Nuclear receptors FXR and SHP regulate protein N-glycan modifications in the liver

The cell biology of the hepatocyte: A membrane trafficking machine

(2019) Ryan J. Schulze et al.   JOURNAL OF CELL BIOLOGY

Heterochromatin protein 1α interacts with parallel RNA and DNA G-quadruplexes

(2019) Ruby J Roach et al.   NUCLEIC ACIDS RESEARCH

XBP1s activation can globally remodel N-glycan structure distribution patterns

(2018) Madeline Y. Wong et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Processing of the Terminal Alpha-1,2-Linked Mannose Residues From Oligomannosidic N-Glycans Is Critical for Proper Root Growth

(2018) Christiane Veit et al.   Frontiers in Plant Science

Nutrient-sensing nuclear receptors PPARα and FXR control liver energy balance

(2017) Geoffrey A. Preidis et al.   JOURNAL OF CLINICAL INVESTIGATION

Diminished Ost3-dependent N-glycosylation of the BiP nucleotide exchange factor Sil1 is an adaptive response to reductive ER stress

(2017) Kofi L. P. Stevens et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

N-linked glycosylation and homeostasis of the endoplasmic reticulum

(2016) Natalia Cherepanova et al.   CURRENT OPINION IN CELL BIOLOGY

Glycosylation Quality Control by the Golgi Structure

(2016) Xiaoyan Zhang et al.   JOURNAL OF MOLECULAR BIOLOGY

Unconjugated secondary bile acids activate the unfolded protein response and induce golgi fragmentation via a src-kinase-dependant mechanism

(2016) Ruchika Sharma et al.   Oncotarget

Role of Glycans in Cancer Cells Undergoing Epithelial–Mesenchymal Transition

(2016) Xiang Li et al.   Frontiers in Oncology

XBP1s Links the Unfolded Protein Response to the Molecular Architecture of Mature N-Glycans

(2015) Mahender B. Dewal et al.   CHEMISTRY & BIOLOGY

Biosynthetic Machinery Involved in Aberrant Glycosylation: Promising Targets for Developing of Drugs Against Cancer

(2015) Andréia Vasconcelos-dos-Santos et al.   Frontiers in Oncology

HTSeq--a Python framework to work with high-throughput sequencing data

(2014) S. Anders et al.   BIOINFORMATICS

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

Another Shp on the Horizon for Bile Acids

(2014) Alessia Perino et al.   Cell Metabolism

Comprehensive Mapping of Protein N-Glycosylation in Human Liver by Combining Hydrophilic Interaction Chromatography and Hydrazide Chemistry

(2014) Jun Zhu et al.   JOURNAL OF PROTEOME RESEARCH

Human FXR Regulates SHP Expression through Direct Binding to an LRH-1 Binding Site, Independent of an IR-1 and LRH-1

(2014) Martijn O. Hoeke et al.   PLoS One

N-linked protein glycosylation in the ER

(2013) Markus Aebi   BIOCHIMICA ET BIOPHYSICA ACTA-MOLECULAR CELL RESEARCH

Complex N-glycans: the story of the “yellow brick road”

(2013) Harry Schachter   GLYCOCONJUGATE JOURNAL

Borate-aided anion exchange high-performance liquid chromatography of uridine diphosphate-sugars in brain, heart, adipose and liver tissues

(2013) Sanna Oikari et al.   JOURNAL OF CHROMATOGRAPHY A

Bile Acids Activate YAP to Promote Liver Carcinogenesis

(2013) Sayeepriyadarshini Anakk et al.   Cell Reports

STAR: ultrafast universal RNA-seq aligner

(2012) Alexander Dobin et al.   BIOINFORMATICS

Branched N-glycans and their implications for cell adhesion, signaling and clinical applications for cancer biomarkers and in therapeutics

(2012) Naoyuki Taniguchi et al.   BMB Reports

Deoxycholic acid impairs glycosylation and fucosylation processes in esophageal epithelial cells

(2012) A.-M. Byrne et al.   GLYCOBIOLOGY

FIMO: scanning for occurrences of a given motif

(2011) Charles E. Grant et al.   BIOINFORMATICS

Mechanisms and principles of N-linked protein glycosylation

(2011) Flavio Schwarz et al.   CURRENT OPINION IN STRUCTURAL BIOLOGY

The Unfolded Protein Response: From Stress Pathway to Homeostatic Regulation

(2011) P. Walter et al.   SCIENCE

Golgi Glycosylation

(2011) P. Stanley   Cold Spring Harbor Perspectives in Biology

Bile acids modulate the Golgi membrane fission process via a protein kinase Cη and protein kinase D-dependent pathway in colonic epithelial cells

(2010) Anne-Marie Byrne et al.   CARCINOGENESIS

Combined deletion of Fxr and Shp in mice induces Cyp17a1 and results in juvenile onset cholestasis

(2010) Sayeepriyadarshini Anakk et al.   JOURNAL OF CLINICAL INVESTIGATION

Genome-wide tissue-specific farnesoid X receptor binding in mouse liver and intestine

(2009) Ann M. Thomas et al.   HEPATOLOGY

Bile acids: regulation of synthesis

(2009) John Y. L. Chiang   JOURNAL OF LIPID RESEARCH

Alteration of protein glycosylation in liver diseases

(2008) Bram Blomme et al.   JOURNAL OF HEPATOLOGY

Fifty years of advances in bile acid synthesis and metabolism

(2008) David W. Russell   JOURNAL OF LIPID RESEARCH