标题
Population genomic evidence of Plasmodium vivax Southeast Asian origin
作者
关键词
-
出版物
Science Advances
Volume 7, Issue 18, Pages eabc3713
出版商
American Association for the Advancement of Science (AAAS)
发表日期
2021-04-29
DOI
10.1126/sciadv.abc3713
参考文献
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注意:仅列出部分参考文献,下载原文获取全部文献信息。- Human Plasmodium vivax diversity, population structure and evolutionary origin
- (2020) Virginie Rougeron et al. PLoS Neglected Tropical Diseases
- Genomic analysis of Plasmodium vivax in southern Ethiopia reveals selective pressures in multiple parasite mechanisms
- (2019) Sarah Auburn et al. JOURNAL OF INFECTIOUS DISEASES
- Growing evidence of Plasmodium vivax across malaria-endemic Africa
- (2019) Katherine A. Twohig et al. PLoS Neglected Tropical Diseases
- Mapping the global endemicity and clinical burden of Plasmodium vivax, 2000–17: a spatial and temporal modelling study
- (2019) Katherine E Battle et al. LANCET
- Plasmodium vivax Malaria viewed through the lens of an eradicated European strain
- (2019) Lucy van Dorp et al. MOLECULAR BIOLOGY AND EVOLUTION
- hmmIBD: software to infer pairwise identity by descent between haploid genotypes
- (2018) Stephen F. Schaffner et al. MALARIA JOURNAL
- Genomic Analyses Reveal the Common Occurrence and Complexity of Plasmodium vivax Relapses in Cambodia
- (2018) Jean Popovici et al. mBio
- Genomic analysis of a pre-elimination Malaysian Plasmodium vivax population reveals selective pressures and changing transmission dynamics
- (2018) Sarah Auburn et al. Nature Communications
- Human migration and the spread of malaria parasites to the New World
- (2018) Priscila T. Rodrigues et al. Scientific Reports
- Genomes of all known members of a Plasmodium subgenus reveal paths to virulent human malaria
- (2018) Thomas D. Otto et al. Nature Microbiology
- Evolutionary history of humanPlasmodium vivaxrevealed by genome-wide analyses of related ape parasites
- (2018) Dorothy E. Loy et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Plasmodium vivax-like genome sequences shed new insights into Plasmodium vivax biology and evolution
- (2018) Aude Gilabert et al. PLOS BIOLOGY
- PopLDdecay: a fast and effective tool for linkage disequilibrium decay analysis based on variant call format files
- (2018) Chi Zhang et al. BIOINFORMATICS
- Local PCA Shows How the Effect of Population Structure Differs Along the Genome
- (2018) Han Li et al. GENETICS
- Efficient Inference of Recent and Ancestral Recombination within Bacterial Populations
- (2017) Rafal Mostowy et al. MOLECULAR BIOLOGY AND EVOLUTION
- Effects of sampling close relatives on some elementary population genetics analyses
- (2017) Jinliang Wang Molecular Ecology Resources
- Minimum sample sizes for population genomics: an empirical study from an Amazonian plant species
- (2017) Alison G. Nazareno et al. Molecular Ecology Resources
- Genetic diversity of the African malaria vector Anopheles gambiae
- (2017) Alistair Miles et al. NATURE
- Selective Whole-Genome Amplification Is a Robust Method That Enables Scalable Whole-Genome Sequencing of Plasmodium vivax from Unprocessed Clinical Samples
- (2017) Annie N. Cowell et al. mBio
- Genome-wide diversity and differentiation in New World populations of the human malaria parasite Plasmodium vivax
- (2017) Thais C. de Oliveira et al. PLoS Neglected Tropical Diseases
- Global Epidemiology of Plasmodium vivax
- (2016) Rosalind E. Howes et al. AMERICAN JOURNAL OF TROPICAL MEDICINE AND HYGIENE
- Population genomics studies identify signatures of global dispersal and drug resistance in Plasmodium vivax
- (2016) Daniel N Hupalo et al. NATURE GENETICS
- Genomic analysis of local variation and recent evolution in Plasmodium vivax
- (2016) Richard D Pearson et al. NATURE GENETICS
- Ape malaria transmission and potential for ape-to-human transfers in Africa
- (2016) Boris Makanga et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Population Genetics of Plasmodium vivax in the Peruvian Amazon
- (2016) Christopher Delgado-Ratto et al. PLoS Neglected Tropical Diseases
- Dynamics of Indian Ocean Slavery Revealed through Isotopic Data from the Colonial Era Cobern Street Burial Site, Cape Town, South Africa (1750-1827)
- (2016) Lisette M. Kootker et al. PLoS One
- Diversity of malaria parasites in great apes in Gabon
- (2015) Larson Boundenga et al. MALARIA JOURNAL
- Clumpak : a program for identifying clustering modes and packaging population structure inferences across K
- (2015) Naama M. Kopelman et al. Molecular Ecology Resources
- Genetic architecture of artemisinin-resistant Plasmodium falciparum
- (2015) Olivo Miotto et al. NATURE GENETICS
- The Dynamics of Incomplete Lineage Sorting across the Ancient Adaptive Radiation of Neoavian Birds
- (2015) Alexander Suh et al. PLOS BIOLOGY
- IQ-TREE: A Fast and Effective Stochastic Algorithm for Estimating Maximum-Likelihood Phylogenies
- (2014) Lam-Tung Nguyen et al. MOLECULAR BIOLOGY AND EVOLUTION
- African origin of the malaria parasite Plasmodium vivax
- (2014) Weimin Liu et al. Nature Communications
- CrossMap: a versatile tool for coordinate conversion between genome assemblies
- (2013) Hao Zhao et al. BIOINFORMATICS
- Evidence and Implications of Mortality Associated with Acute Plasmodium vivax Malaria
- (2013) J. Kevin Baird CLINICAL MICROBIOLOGY REVIEWS
- Higher microsatellite diversity in Plasmodium vivax than in sympatric Plasmodium falciparum populations in Pursat, Western Cambodia
- (2013) Pamela Orjuela-Sánchez et al. EXPERIMENTAL PARASITOLOGY
- Discordance of Species Trees with Their Most Likely Gene Trees: A Unifying Principle
- (2013) N. A. Rosenberg MOLECULAR BIOLOGY AND EVOLUTION
- The Evolutionary History of Plasmodium vivax as Inferred from Mitochondrial Genomes: Parasite Genetic Diversity in the Americas
- (2013) Jesse E. Taylor et al. MOLECULAR BIOLOGY AND EVOLUTION
- Genetic signature of a range expansion and leap-frog event after the recent invasion of Europe by the grapevine downy mildew pathogenPlasmopara viticola
- (2013) Michael C. Fontaine et al. MOLECULAR ECOLOGY
- Great ape genetic diversity and population history
- (2013) Javier Prado-Martinez et al. NATURE
- Effective Preparation of Plasmodium vivax Field Isolates for High-Throughput Whole Genome Sequencing
- (2013) Sarah Auburn et al. PLoS One
- Plasmodium falciparum-like parasites infecting wild apes in southern Cameroon do not represent a recurrent source of human malaria
- (2013) S. A. Sundararaman et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Diversity, host switching and evolution of Plasmodium vivax infecting African great apes
- (2013) F. Prugnolle et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Plasmodium vivax populations revisited: mitochondrial genomes of temperate strains in Asia suggest ancient population expansion
- (2012) Miao Miao et al. BMC EVOLUTIONARY BIOLOGY
- Using CF11 cellulose columns to inexpensively and effectively remove human DNA from Plasmodium falciparum-infected whole blood samples
- (2012) Meera Venkatesan et al. MALARIA JOURNAL
- Analysis of Plasmodium falciparum diversity in natural infections by deep sequencing
- (2012) Magnus Manske et al. NATURE
- Plasmodium cynomolgi genome sequences provide insight into Plasmodium vivax and the monkey malaria clade
- (2012) Shin-Ichiro Tachibana et al. NATURE GENETICS
- The malaria parasite Plasmodium vivax exhibits greater genetic diversity than Plasmodium falciparum
- (2012) Daniel E Neafsey et al. NATURE GENETICS
- Estimates of Genetic Differentiation Measured by FST Do Not Necessarily Require Large Sample Sizes When Using Many SNP Markers
- (2012) Eva-Maria Willing et al. PLoS One
- Inference of Population Splits and Mixtures from Genome-Wide Allele Frequency Data
- (2012) Joseph K. Pickrell et al. PLoS Genetics
- Whole Genome Sequencing of Field Isolates Provides Robust Characterization of Genetic Diversity in Plasmodium vivax
- (2012) Ernest R. Chan et al. PLoS Neglected Tropical Diseases
- The variant call format and VCFtools
- (2011) P. Danecek et al. BIOINFORMATICS
- The Origins of African Plasmodium vivax; Insights from Mitochondrial Genome Sequencing
- (2011) Richard Culleton et al. PLoS One
- Some Lessons for the Future from the Global Malaria Eradication Programme (1955–1969)
- (2011) José A. Nájera et al. PLOS MEDICINE
- Hybrid selection for sequencing pathogen genomes from clinical samples
- (2011) Alexandre Melnikov et al. GENOME BIOLOGY
- Geographic Structure of Plasmodium vivax: Microsatellite Analysis of Parasite Populations from Sri Lanka, Myanmar, and Ethiopia
- (2010) Sharmini Gunawardena et al. AMERICAN JOURNAL OF TROPICAL MEDICINE AND HYGIENE
- Plasmodium falciparum Accompanied the Human Expansion out of Africa
- (2010) Kazuyuki Tanabe et al. CURRENT BIOLOGY
- The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data
- (2010) A. McKenna et al. GENOME RESEARCH
- Reconstructing routes of invasion using genetic data: why, how and so what?
- (2010) ARNAUD ESTOUP et al. MOLECULAR ECOLOGY
- Origin of the human malaria parasite Plasmodium falciparum in gorillas
- (2010) Weimin Liu et al. NATURE
- The Sequence Read Archive
- (2010) R. Leinonen et al. NUCLEIC ACIDS RESEARCH
- Plasmodium vivax clinical malaria is commonly observed in Duffy-negative Malagasy people
- (2010) D. Menard et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- On the Diversity of Malaria Parasites in African Apes and the Origin of Plasmodium falciparum from Bonobos
- (2010) Sabrina Krief et al. PLoS Pathogens
- Genetic Consequences of Range Expansions
- (2009) Laurent Excoffier et al. Annual Review of Ecology Evolution and Systematics
- The Sequence Alignment/Map format and SAMtools
- (2009) H. Li et al. BIOINFORMATICS
- Fast and accurate short read alignment with Burrows-Wheeler transform
- (2009) H. Li et al. BIOINFORMATICS
- Fast model-based estimation of ancestry in unrelated individuals
- (2009) D. H. Alexander et al. GENOME RESEARCH
- Mitochondrial DNA as a marker of molecular diversity: a reappraisal
- (2009) N. GALTIER et al. MOLECULAR ECOLOGY
- Explaining worldwide patterns of human genetic variation using a coalescent-based serial founder model of migration outward from Africa
- (2009) M. DeGiorgio et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Gene tree discordance, phylogenetic inference and the multispecies coalescent
- (2009) James H. Degnan et al. TRENDS IN ECOLOGY & EVOLUTION
- A Genealogical Interpretation of Principal Components Analysis
- (2009) Gil McVean PLoS Genetics
- Worldwide Human Relationships Inferred from Genome-Wide Patterns of Variation
- (2008) J. Z. Li et al. SCIENCE
- Hemiplasy: A New Term in the Lexicon of Phylogenetics
- (2008) John C. Avise et al. SYSTEMATIC BIOLOGY
- Demographic History of European Populations of Arabidopsis thaliana
- (2008) Olivier François et al. PLoS Genetics
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