Environmentally Driven Color Variation in the Pearl Oyster Pinctada margaritifera var. cumingii (Linnaeus, 1758) Is Associated With Differential Methylation of CpGs in Pigment- and Biomineralization-Related Genes

Population Connectivity and Genetic Assessment of Exploited and Natural Populations of Pearl Oysters within a French Polynesian Atoll Lagoon

(2020) Céline M. O. Reisser et al.   Genes

Integrated analysis of microRNA and mRNA expression profiles in Crassostrea gigas to reveal functional miRNA and miRNA-targets regulating shell pigmentation

(2020) Dandan Feng et al.   Scientific Reports

Colour plasticity in the shells and pearls of animal graft model Pinctada margaritifera assessed by HSV colour quantification

(2019) Pierre-Louis Stenger et al.   Scientific Reports

Function and underlying mechanisms of seasonal colour moulting in mammals and birds: what keeps them changing in a warming world?

(2018) Marketa Zimova et al.   BIOLOGICAL REVIEWS

GOATOOLS: A Python library for Gene Ontology analyses

(2018) D. V. Klopfenstein et al.   Scientific Reports

Transcriptional profiling of long non-coding RNAs in mantle of Crassostrea gigas and their association with shell pigmentation

(2018) Dandan Feng et al.   Scientific Reports

Influence of temperature and pearl rotation on biomineralization in the pearl oyster, Pinctada margaritifera

(2018) Gilles Le Moullac et al.   JOURNAL OF EXPERIMENTAL BIOLOGY

Role of gene body methylation in acclimatization and adaptation in a basal metazoan

(2018) Groves Dixon et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Epigenetics in natural animal populations

(2017) J. Hu et al.   JOURNAL OF EVOLUTIONARY BIOLOGY

The biology of color

(2017) Innes C. Cuthill et al.   SCIENCE

Whole genome analysis of a schistosomiasis-transmitting freshwater snail

(2017) Coen M. Adema et al.   Nature Communications

Epigenetic considerations in aquaculture

(2017) Mackenzie R. Gavery et al.   PeerJ

Culture site dependence on pearl size realization in Pinctada margaritifera in relation to recipient oyster growth and mantle graft biomineralization gene expression using the same donor phenotype

(2016) Lore Le Pabic et al.   ESTUARINE COASTAL AND SHELF SCIENCE

Glutathione as a skin whitening agent: Facts, myths, evidence and controversies

(2016) Sidharth Sonthalia et al.   Indian Journal of Dermatology Venereology & Leprology

The Glycosylphosphatidylinositol Anchor Biosynthesis GenesGPI12,GAA1, andGPI8Are Essential for Cell-Wall Integrity and Pathogenicity of the Maize Anthracnose FungusColletotrichum graminicola

(2016) Ely Oliveira-Garcia et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Gremlin promotes retinal pigmentation epithelial (RPE) cell proliferation, migration and VEGF production via activating VEGFR2-Akt-mTORC2 signaling

(2016) Yuan Liu et al.   Oncotarget

Carotenoids in Staple Cereals: Metabolism, Regulation, and Genetic Manipulation

(2016) Shengnan Zhai et al.   Frontiers in Plant Science

Is pearl colour produced fromPinctada margaritiferapredictable through shell phenotypes and rearing environments selections?

(2015) Chin-Long Ky et al.   AQUACULTURE RESEARCH

Identification of genes associated with shell color in the black-lipped pearl oyster, Pinctada margaritifera

(2015) Sarah Lemer et al.   BMC GENOMICS

Identification of genes that may regulate the expression of the transcription factor production of anthocyanin pigment 1 (PAP1)/MYB75 involved in Arabidopsis anthocyanin biosynthesis

(2015) Dong Ho Shin et al.   PLANT CELL REPORTS

Genome-wide and single-base resolution DNA methylomes of the Pacific oyster Crassostrea gigas provide insight into the evolution of invertebrate CpG methylation

(2015) Xiaotong Wang et al.   BMC GENOMICS

Indirect improvement of pearl grade and shape in farmed Pinctada margaritifera by donor “oyster” selection for green pearls

(2014) Chin-Long Ky et al.   AQUACULTURE

HTSeq--a Python framework to work with high-throughput sequencing data

(2014) S. Anders et al.   BIOINFORMATICS

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

3β-Acetyl tormentic acid reverts MRP1/ABCC1 mediated cancer resistance through modulation of intracellular levels of GSH and inhibition of GST activity

(2014) Gleice da Graça Rocha et al.   EUROPEAN JOURNAL OF PHARMACOLOGY

Human genetic disorders involving glycosylphosphatidylinositol (GPI) anchors and glycosphingolipids (GSL)

(2014) Bobby G. Ng et al.   JOURNAL OF INHERITED METABOLIC DISEASE

deepTools: a flexible platform for exploring deep-sequencing data

(2014) Fidel Ramírez et al.   NUCLEIC ACIDS RESEARCH

Temperature and Food Influence Shell Growth and Mantle Gene Expression of Shell Matrix Proteins in the Pearl Oyster Pinctada margaritifera

(2014) Caroline Joubert et al.   PLoS One

Genome-wide profiling of DNA methylation and gene expression in Crassostrea gigas male gametes

(2014) Claire E. Olson et al.   Frontiers in Physiology

Family effect on cultured pearl quality in black-lipped pearl oysterPinctada margaritiferaand insights for genetic improvement

(2013) Chin-Long Ky et al.   AQUATIC LIVING RESOURCES

Transcriptome analysis of neuropeptides and G-protein coupled receptors (GPCRs) for neuropeptides in the brown planthopper Nilaparvata lugens

(2013) Yoshiaki Tanaka et al.   PEPTIDES

Epigenetic regulation of adaptive responses of forest tree species to the environment

(2013) Katharina Bräutigam et al.   Ecology and Evolution

Predominant intragenic methylation is associated with gene expression characteristics in a bivalve mollusc

(2013) Mackenzie R. Gavery et al.   PeerJ

The Evolution of Invertebrate Gene Body Methylation

(2012) S. Sarda et al.   MOLECULAR BIOLOGY AND EVOLUTION

Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks

(2012) Cole Trapnell et al.   Nature Protocols

The b Gene of Pea Encodes a Defective Flavonoid 3',5'-Hydroxylase, and Confers Pink Flower Color

(2012) C. Moreau et al.   PLANT PHYSIOLOGY

Different secretory repertoires control the biomineralization processes of prism and nacre deposition of the pearl oyster shell

(2012) B. Marie et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

methylKit: a comprehensive R package for the analysis of genome-wide DNA methylation profiles

(2012) Altuna Akalin et al.   GENOME BIOLOGY

Influence of the Depth on the Shape and Thickness of Nacre Tablets of Pinctada margaritifera Pearl Oyster, and on Oxygen Isotopic Composition

(2012) Marthe Rousseau et al.   Minerals

Bismark: a flexible aligner and methylation caller for Bisulfite-Seq applications

(2011) Felix Krueger et al.   BIOINFORMATICS

BEDTools: a flexible suite of utilities for comparing genomic features

(2010) Aaron R. Quinlan et al.   BIOINFORMATICS

Transcriptome and proteome analysis of Pinctada margaritifera calcifying mantle and shell: focus on biomineralization

(2010) Caroline Joubert et al.   BMC GENOMICS

Single base–resolution methylome of the silkworm reveals a sparse epigenomic map

(2010) Hui Xiang et al.   NATURE BIOTECHNOLOGY

Conservation and divergence of methylation patterning in plants and animals

(2010) S. Feng et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Genome-Wide Evolutionary Analysis of Eukaryotic DNA Methylation

(2010) A. Zemach et al.   SCIENCE

PLAST: parallel local alignment search tool for database comparison

(2009) Van Hoa Nguyen et al.   BMC BIOINFORMATICS

Zebrafish mutations in gart and paics identify crucial roles for de novo purine synthesis in vertebrate pigmentation and ocular development

(2009) A. Ng et al.   DEVELOPMENT

Topological Polar Surface Area Defines Substrate Transport by Multidrug Resistance Associated Protein 1 (MRP1/ABCC1)

(2009) Janaina Fernandes et al.   JOURNAL OF MEDICINAL CHEMISTRY

Physiological and morphological colour change in Antarctic krill, Euphausia superba: a field study in the Lazarev Sea

(2008) L. Auerswald et al.   JOURNAL OF EXPERIMENTAL BIOLOGY

Isolation and Characterization of the N-linked Oligosaccharides in Nacrein from Pinctada fucata

(2008) Daisuke Takakura et al.   MARINE BIOTECHNOLOGY

The agouti mouse model: an epigenetic biosensor for nutritional and environmental alterations on the fetal epigenome

(2008) Dana C Dolinoy   NUTRITION REVIEWS

Recombinant perlucin nucleates the growth of calcium carbonate crystals: Molecular cloning and characterization of perlucin from disk abalone, Haliotis discus discus

(2007) Ning Wang et al.   COMPARATIVE BIOCHEMISTRY AND PHYSIOLOGY B-BIOCHEMISTRY & MOLECULAR BIOLOGY