The Amsterdam Open MRI Collection, a set of multimodal MRI datasets for individual difference analyses

BrainIAK tutorials: User-friendly learning materials for advanced fMRI analysis

(2020) Manoj Kumar et al.   PLoS Computational Biology

Religious belief and cognitive conflict sensitivity: A preregistered fMRI study

(2020) Suzanne Hoogeveen et al.   CORTEX

Analysis of task-based functional MRI data preprocessed with fMRIPrep

(2020) Oscar Esteban et al.   Nature Protocols

Choosing to view morbid information involves reward circuitry

(2020) Suzanne Oosterwijk et al.   Scientific Reports

A mind-brain-body dataset of MRI, EEG, cognition, emotion, and peripheral physiology in young and old adults

(2019) Anahit Babayan et al.   Scientific Data

A functional connectome phenotyping dataset including cognitive state and personality measures

(2019) Natacha Mendes et al.   Scientific Data

The relationship between individual differences in gray matter volume and religiosity and mystical experiences: A preregistered voxel‐based morphometry study

(2019) Michiel Elk et al.   EUROPEAN JOURNAL OF NEUROSCIENCE

MRtrix3: A fast, flexible and open software framework for medical image processing and visualisation

(2019) J-Donald Tournier et al.   NEUROIMAGE

A comprehensive evaluation of increasing temporal resolution with multiband-accelerated protocols and effects on statistical outcome measures in fMRI

(2018) Lysia Demetriou et al.   NEUROIMAGE

Automated quality control for within and between studies diffusion MRI data using a non-parametric framework for movement and distortion correction

(2018) Matteo Bastiani et al.   NEUROIMAGE

How to control for confounds in decoding analyses of neuroimaging data

(2018) Lukas Snoek et al.   NEUROIMAGE

fMRIPrep: a robust preprocessing pipeline for functional MRI

(2018) Oscar Esteban et al.   NATURE METHODS

The PhysIO Toolbox for Modeling Physiological Noise in fMRI Data

(2017) Lars Kasper et al.   JOURNAL OF NEUROSCIENCE METHODS

Best practices in data analysis and sharing in neuroimaging using MRI

(2017) Thomas E Nichols et al.   NATURE NEUROSCIENCE

MRIQC: Advancing the automatic prediction of image quality in MRI from unseen sites

(2017) Oscar Esteban et al.   PLoS One

Mindboggling morphometry of human brains

(2017) Arno Klein et al.   PLoS Computational Biology

Choosing the negative: A behavioral demonstration of morbid curiosity

(2017) Suzanne Oosterwijk   PLoS One

The first step for neuroimaging data analysis: DICOM to NIfTI conversion

(2016) Xiangrui Li et al.   JOURNAL OF NEUROSCIENCE METHODS

Multimodal population brain imaging in the UK Biobank prospective epidemiological study

(2016) Karla L Miller et al.   NATURE NEUROSCIENCE

An integrated approach to correction for off-resonance effects and subject movement in diffusion MR imaging

(2016) Jesper L.R. Andersson et al.   NEUROIMAGE

Incorporating outlier detection and replacement into a non-parametric framework for movement and distortion correction of diffusion MR images

(2016) Jesper L. R Andersson et al.   NEUROIMAGE

Denoising of diffusion MRI using random matrix theory

(2016) Jelle Veraart et al.   NEUROIMAGE

Building a Science of Individual Differences from fMRI

(2016) Julien Dubois et al.   TRENDS IN COGNITIVE SCIENCES

Intensity Inhomogeneity Correction of Structural MR Images: A Data-Driven Approach to Define Input Algorithm Parameters

(2016) Marco Ganzetti et al.   Frontiers in Neuroinformatics

The brain imaging data structure, a format for organizing and describing outputs of neuroimaging experiments

(2016) Krzysztof J. Gorgolewski et al.   Scientific Data

Characterization and Correction of Geometric Distortions in 814 Diffusion Weighted Images

(2016) Jeffrey Mark Treiber et al.   PLoS One

Visual Information Shapes the Dynamics of Corticobasal Ganglia Pathways during Response Selection and Inhibition

(2015) Sara Jahfari et al.   JOURNAL OF COGNITIVE NEUROSCIENCE

Diffusion MRI noise mapping using random matrix theory

(2015) Jelle Veraart et al.   MAGNETIC RESONANCE IN MEDICINE

Gibbs-ringing artifact removal based on local subvoxel-shifts

(2015) Elias Kellner et al.   MAGNETIC RESONANCE IN MEDICINE

NeuroVault.org: a web-based repository for collecting and sharing unthresholded statistical maps of the human brain

(2015) Krzysztof J. Gorgolewski et al.   Frontiers in Neuroinformatics

Automated correction of improperly rotated diffusion gradient orientations in diffusion weighted MRI

(2014) Ben Jeurissen et al.   MEDICAL IMAGE ANALYSIS

Machine learning for neuroimaging with scikit-learn

(2014) Alexandre Abraham et al.   Frontiers in Neuroinformatics

Bottom-up and top-down attention are independent

(2013) Y. Pinto et al.   JOURNAL OF VISION

Power failure: why small sample size undermines the reliability of neuroscience

(2013) Katherine S. Button et al.   NATURE REVIEWS NEUROSCIENCE

The WU-Minn Human Connectome Project: An overview

(2013) David C. Van Essen et al.   NEUROIMAGE

Weighted linear least squares estimation of diffusion MRI parameters: Strengths, limitations, and pitfalls

(2013) Jelle Veraart et al.   NEUROIMAGE

Methods to detect, characterize, and remove motion artifact in resting state fMRI

(2013) Jonathan D. Power et al.   NEUROIMAGE

FreeSurfer

(2012) Bruce Fischl   NEUROIMAGE

FSL

(2011) Mark Jenkinson et al.   NEUROIMAGE

Spurious but systematic correlations in functional connectivity MRI networks arise from subject motion

(2011) Jonathan D. Power et al.   NEUROIMAGE

Nipype: A Flexible, Lightweight and Extensible Neuroimaging Data Processing Framework in Python

(2011) Krzysztof Gorgolewski et al.   Frontiers in Neuroinformatics

N4ITK: Improved N3 Bias Correction

(2010) Nicholas J Tustison et al.   IEEE TRANSACTIONS ON MEDICAL IMAGING

Automatic parcellation of human cortical gyri and sulci using standard anatomical nomenclature

(2010) Christophe Destrieux et al.   NEUROIMAGE

Accurate and robust brain image alignment using boundary-based registration

(2009) Douglas N. Greve et al.   NEUROIMAGE

Group comparison of resting-state FMRI data using multi-subject ICA and dual regression

(2009) CF Beckmann et al.   NEUROIMAGE

Unbiased nonlinear average age-appropriate brain templates from birth to adulthood

(2009) VS Fonov et al.   NEUROIMAGE

Correspondence of the brain's functional architecture during activation and rest

(2009) S. M. Smith et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The NimStim set of facial expressions: Judgments from untrained research participants

(2009) Nim Tottenham et al.   PSYCHIATRY RESEARCH

Brainstem functional magnetic resonance imaging: Disentangling signal from physiological noise

(2008) Ann K. Harvey et al.   JOURNAL OF MAGNETIC RESONANCE IMAGING

The respiration response function: The temporal dynamics of fMRI signal fluctuations related to changes in respiration

(2008) Rasmus M. Birn et al.   NEUROIMAGE

Influence of heart rate on the BOLD signal: The cardiac response function

(2008) Catie Chang et al.   NEUROIMAGE

Symmetric diffeomorphic image registration with cross-correlation: Evaluating automated labeling of elderly and neurodegenerative brain

(2007) B AVANTS et al.   MEDICAL IMAGE ANALYSIS