Gene variants of coagulation related proteins that interact with SARS-CoV-2

Genomic diversity of SARS-CoV-2 in Coronavirus Disease 2019 patients

(2020) Zijie Shen et al.   CLINICAL INFECTIOUS DISEASES

A novel deep intronic SERPING1 variant as a cause of hereditary angioedema due to C1-inhibitor deficiency

(2020) Sofia Vatsiou et al.   ALLERGOLOGY INTERNATIONAL

Assessing Differential Impacts of COVID-19 on Black Communities

(2020) Gregorio A. Millett et al.   ANNALS OF EPIDEMIOLOGY

Structural Investigation of the Vitamin K Epoxide Reductase (VKORC1) Binding Site with Vitamin K

(2020) Nolan Chatron et al.   BIOCHEMISTRY

COVID-19 and its implications for thrombosis and anticoagulation

(2020) Jean Marie Connors et al.   BLOOD

COVID19 coagulopathy in Caucasian patients

(2020) Helen Fogarty et al.   BRITISH JOURNAL OF HAEMATOLOGY

Thrombotic events in SARS-CoV-2 patients: an urgent call for ultrasound screening

(2020) Guido Tavazzi et al.   INTENSIVE CARE MEDICINE

Prevalence of venous thromboembolism in patients with severe novel coronavirus pneumonia

(2020) Songping Cui et al.   JOURNAL OF THROMBOSIS AND HAEMOSTASIS

Thromboembolic events in patients with SARS-CoV-2

(2020) Jun Jie Ng et al.   JOURNAL OF VASCULAR SURGERY

Kawasaki-like disease: emerging complication during the COVID-19 pandemic

(2020) Russell M Viner et al.   LANCET

A SARS-CoV-2 protein interaction map reveals targets for drug repurposing

(2020) David E. Gordon et al.   NATURE

The mutational constraint spectrum quantified from variation in 141,456 humans

(2020) Konrad J. Karczewski et al.   NATURE

Pulmonary Vascular Endothelialitis, Thrombosis, and Angiogenesis in Covid-19

(2020) Maximilian Ackermann et al.   NEW ENGLAND JOURNAL OF MEDICINE

Demographic science aids in understanding the spread and fatality rates of COVID-19

(2020) Jennifer Beam Dowd et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Cytokine release syndrome in severe COVID-19

(2020) John B. Moore et al.   SCIENCE

Kallikrein-kinin blockade in patients with COVID-19 to prevent acute respiratory distress syndrome

(2020) Frank L van de Veerdonk et al.   eLife

COVID-19 and coagulation: bleeding and thrombotic manifestations of SARS-CoV-2 infection

(2020) Hanny Al-Samkari et al.   BLOOD

Coronavirus Disease 2019 Case Surveillance — United States, January 22–May 30, 2020

(2020) Erin K. Stokes et al.   MMWR-MORBIDITY AND MORTALITY WEEKLY REPORT

The Lung, the Heart, the Novel Coronavirus, and the Renin-Angiotensin System; The Need for Clinical Trials

(2020) Eugenie R. Lumbers et al.   Frontiers in Medicine

Interpretation of the effect of CYP2C9, VKORC1 and CYP4F2 variants on warfarin dosing adjustment in Turkey

(2019) Ahmet Kocael et al.   MOLECULAR BIOLOGY REPORTS

Codon and Codon-Pair Usage Tables (CoCoPUTs): Facilitating Genetic Variation Analyses and Recombinant Gene Design

(2019) Aikaterini Alexaki et al.   JOURNAL OF MOLECULAR BIOLOGY

Benchmarking fold detection by DaliLite v.5

(2019) Liisa Holm   BIOINFORMATICS

miRDB: an online database for prediction of functional microRNA targets

(2019) Yuhao Chen et al.   NUCLEIC ACIDS RESEARCH

Attenuation of pulmonary ACE2 activity impairs inactivation of des-Arg9 bradykinin/BKB1R axis and facilitates LPS-induced neutrophil infiltration

(2018) Chhinder P. Sodhi et al.   AMERICAN JOURNAL OF PHYSIOLOGY-LUNG CELLULAR AND MOLECULAR PHYSIOLOGY

VKORC1L1, An Enzyme Mediating the Effect of Vitamin K in Liver and Extrahepatic Tissues

(2018) Julie Lacombe et al.   Nutrients

Protocadherin-1 is essential for cell entry by New World hantaviruses

(2018) Rohit K. Jangra et al.   NATURE

The BioGRID interaction database: 2019 update

(2018) Rose Oughtred et al.   NUCLEIC ACIDS RESEARCH

Mutation effects predicted from sequence co-variation

(2017) Thomas A Hopf et al.   NATURE BIOTECHNOLOGY

Evidence of evolutionary selection for cotranslational folding

(2017) William M. Jacobs et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

%MinMax: A versatile tool for calculating and comparing synonymous codon usage and its impact on protein folding

(2017) Anabel Rodriguez et al.   PROTEIN SCIENCE

Quality over quantity: optimizing co-translational protein folding with non-‘optimal’ synonymous codons

(2016) Giselle N Jacobson et al.   CURRENT OPINION IN STRUCTURAL BIOLOGY

Severe Acute Respiratory Syndrome Coronavirus ORF7a Inhibits Bone Marrow Stromal Antigen 2 Virion Tethering through a Novel Mechanism of Glycosylation Interference

(2015) Justin K. Taylor et al.   JOURNAL OF VIROLOGY

The I-TASSER Suite: protein structure and function prediction

(2015) Jianyi Yang et al.   NATURE METHODS

I-TASSER server: new development for protein structure and function predictions

(2015) Jianyi Yang et al.   NUCLEIC ACIDS RESEARCH

Structural Modeling Insights into Human VKORC1 Phenotypes

(2015) Katrin Czogalla et al.   Nutrients

ZDOCK server: interactive docking prediction of protein-protein complexes and symmetric multimers

(2014) B. G. Pierce et al.   BIOINFORMATICS

Genomic HEXploring allows landscaping of novel potential splicing regulatory elements

(2014) Steffen Erkelenz et al.   NUCLEIC ACIDS RESEARCH

Association ofCFHandSERPING1polymorphisms with anterior uveitis

(2013) Ming-ming Yang et al.   BRITISH JOURNAL OF OPHTHALMOLOGY

Effect of CYP2C9, VKORC1, CYP4F2 and GGCX genetic variants on warfarin maintenance dose and explicating a new pharmacogenetic algorithm in South Indian population

(2013) Dhakchinamoorthi Krishna Kumar et al.   EUROPEAN JOURNAL OF CLINICAL PHARMACOLOGY

Novel Associations of VKORC1 Variants with Higher Acenocoumarol Requirements

(2013) Ana Isabel Anton et al.   PLoS One

High-Resolution Comparative Modeling with RosettaCM

(2013) Yifan Song et al.   STRUCTURE

Sensitive measurement of single-nucleotide polymorphism-induced changes of RNA conformation: application to disease studies

(2012) Raheleh Salari et al.   NUCLEIC ACIDS RESEARCH

Dosing equation for tacrolimus using genetic variants and clinical factors

(2011) Chaitali Passey et al.   BRITISH JOURNAL OF CLINICAL PHARMACOLOGY

Quantitative evaluation of all hexamers as exonic splicing elements

(2011) Shengdong Ke et al.   GENOME RESEARCH

Benchmarking and Analysis of Protein Docking Performance in Rosetta v3.2

(2011) Sidhartha Chaudhury et al.   PLoS One

The SARS-Coronavirus-Host Interactome: Identification of Cyclophilins as Target for Pan-Coronavirus Inhibitors

(2011) Susanne Pfefferle et al.   PLoS Pathogens

Warfarin pharmacogenetics: a single VKORC1 polymorphism is predictive of dose across 3 racial groups

(2010) N. A. Limdi et al.   BLOOD

The effect of genetic variants in SERPING1 on the risk of neovascular age-related macular degeneration

(2010) A. Y. Lee et al.   BRITISH JOURNAL OF OPHTHALMOLOGY

Inflammation and coagulation

(2010) Marcel Levi et al.   CRITICAL CARE MEDICINE

Genome-wide association study of childhood acute lymphoblastic leukemia in Korea

(2010) Sohee Han et al.   LEUKEMIA RESEARCH

A method and server for predicting damaging missense mutations

(2010) Ivan A Adzhubei et al.   NATURE METHODS

I-TASSER: a unified platform for automated protein structure and function prediction

(2010) Ambrish Roy et al.   Nature Protocols

Structural insight into the mechanisms of enveloped virus tethering by tetherin

(2010) H. Yang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Structural and functional studies on the extracellular domain of BST2/tetherin in reduced and oxidized conformations

(2010) H. L. Schubert et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

BST-2/tetherin: a new component of the innate immune response to enveloped viruses

(2010) David T. Evans et al.   TRENDS IN MICROBIOLOGY

SERPING1 rs2511988 and age-related macular degeneration

(2009) Jana Kralovicova et al.   LANCET

Transient ribosomal attenuation coordinates protein synthesis and co-translational folding

(2009) Gong Zhang et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Structure prediction for CASP8 with all-atom refinement using Rosetta

(2009) Srivatsan Raman et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Regulatory polymorphism in vitamin K epoxide reductase complex subunit 1 (VKORC1) affects gene expression and warfarin dose requirement

(2008) D. Wang et al.   BLOOD

Association between the SERPING1 gene and age-related macular degeneration: a two-stage case–control study

(2008) Sarah Ennis et al.   LANCET

The RosettaDock server for local protein-protein docking

(2008) S. Lyskov et al.   NUCLEIC ACIDS RESEARCH