Whole genome-based characterisation of antimicrobial resistance and genetic diversity in Campylobacter jejuni and Campylobacter coli from ruminants
出版年份 2021 全文链接
标题
Whole genome-based characterisation of antimicrobial resistance and genetic diversity in Campylobacter jejuni and Campylobacter coli from ruminants
作者
关键词
-
出版物
Scientific Reports
Volume 11, Issue 1, Pages -
出版商
Springer Science and Business Media LLC
发表日期
2021-04-26
DOI
10.1038/s41598-021-88318-0
参考文献
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注意:仅列出部分参考文献,下载原文获取全部文献信息。- Prediction of antimicrobial resistance in clinical Campylobacter jejuni isolates from whole-genome sequencing data
- (2020) Louise Gade Dahl et al. EUROPEAN JOURNAL OF CLINICAL MICROBIOLOGY & INFECTIOUS DISEASES
- Campylobacter species prevalence, characterisation of antimicrobial resistance and analysis of whole-genome sequence of isolates from livestock and humans, Latvia, 2008 to 2016
- (2019) Irēna Meistere et al. Eurosurveillance
- Occurrence of Campylobacter jejuni and Campylobacter coli in Cattle and Sheep in Northern Spain and Changes in Antimicrobial Resistance in Two Studies 10-years Apart
- (2019) Medelin Ocejo et al. Pathogens
- Whole-genome sequence analysis of multidrug resistant Campylobacter spp. isolates: a focus on aminoglycoside resistance determinants
- (2018) Adrien Fabre et al. JOURNAL OF CLINICAL MICROBIOLOGY
- MEGA X: Molecular Evolutionary Genetics Analysis across Computing Platforms
- (2018) Sudhir Kumar et al. MOLECULAR BIOLOGY AND EVOLUTION
- PlasFlow: predicting plasmid sequences in metagenomic data using genome signatures
- (2018) Pawel S Krawczyk et al. NUCLEIC ACIDS RESEARCH
- Rapid and precise alignment of raw reads against redundant databases with KMA
- (2018) Philip T. L. C. Clausen et al. BMC BIOINFORMATICS
- Phylogenetic Relatedness Among Plasmids Harbored by Campylobacter jejuni and Campylobacter coli Isolated From Retail Meats
- (2018) Daya Marasini et al. Frontiers in Microbiology
- PointFinder: a novel web tool for WGS-based detection of antimicrobial resistance associated with chromosomal point mutations in bacterial pathogens
- (2017) Ea Zankari et al. JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY
- PHYLOViZ 2.0: providing scalable data integration and visualization for multiple phylogenetic inference methods
- (2016) Marta Nascimento et al. BIOINFORMATICS
- Mosaic tetracycline resistance genes encoding ribosomal protection proteins
- (2016) Philip J. Warburton et al. JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY
- The conundrum of naming resistance gene determinants
- (2016) Bruno S. Lopes JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY
- MEGARes: an antimicrobial resistance database for high throughput sequencing
- (2016) Steven M. Lakin et al. NUCLEIC ACIDS RESEARCH
- Prevalence and Antimicrobial Resistance of Campylobacter jejuni and Campylobacter coli Isolated from Cattle between 2002 and 2006 in France
- (2016) PIERRE CHÂTRE et al. JOURNAL OF FOOD PROTECTION
- Whole-Genome Sequencing Analysis Accurately Predicts Antimicrobial Resistance Phenotypes in Campylobacter spp.
- (2015) S. Zhao et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- Roary: rapid large-scale prokaryote pan genome analysis
- (2015) Andrew J. Page et al. BIOINFORMATICS
- Global Epidemiology of Campylobacter Infection
- (2015) Nadeem O. Kaakoush et al. CLINICAL MICROBIOLOGY REVIEWS
- Database resources of the National Center for Biotechnology Information
- (2015) NUCLEIC ACIDS RESEARCH
- Genetic Basis and Functional Consequences of Differential Expression of the CmeABC Efflux Pump in Campylobacter jejuni Isolates
- (2015) Tara Grinnage-Pulley et al. PLoS One
- RASTtk: A modular and extensible implementation of the RAST algorithm for building custom annotation pipelines and annotating batches of genomes
- (2015) Thomas Brettin et al. Scientific Reports
- Prokka: rapid prokaryotic genome annotation
- (2014) T. Seemann BIOINFORMATICS
- Trimmomatic: a flexible trimmer for Illumina sequence data
- (2014) Anthony M. Bolger et al. BIOINFORMATICS
- A single nucleotide in the promoter region modulates the expression of the -lactamase OXA-61 in Campylobacter jejuni
- (2014) X. Zeng et al. JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY
- The Comprehensive Antibiotic Resistance Database
- (2013) Andrew G. McArthur et al. ANTIMICROBIAL AGENTS AND CHEMOTHERAPY
- ARG-ANNOT, a New Bioinformatic Tool To Discover Antibiotic Resistance Genes in Bacterial Genomes
- (2013) Sushim Kumar Gupta et al. ANTIMICROBIAL AGENTS AND CHEMOTHERAPY
- QUAST: quality assessment tool for genome assemblies
- (2013) Alexey Gurevich et al. BIOINFORMATICS
- The SEED and the Rapid Annotation of microbial genomes using Subsystems Technology (RAST)
- (2013) Ross Overbeek et al. NUCLEIC ACIDS RESEARCH
- Elucidating the Aetiology of Human Campylobacter coli Infections
- (2013) Francois Roux et al. PLoS One
- Identification of a Novel Genomic Island Conferring Resistance to Multiple Aminoglycoside Antibiotics in Campylobacter coli
- (2012) Shangshang Qin et al. ANTIMICROBIAL AGENTS AND CHEMOTHERAPY
- Identification of acquired antimicrobial resistance genes
- (2012) E. Zankari et al. JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY
- Selenium-Dependent Biogenesis of Formate Dehydrogenase in Campylobacter jejuni Is Controlled by the fdhTU Accessory Genes
- (2012) F. L. Shaw et al. JOURNAL OF BACTERIOLOGY
- SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing
- (2012) Anton Bankevich et al. JOURNAL OF COMPUTATIONAL BIOLOGY
- Quality control and preprocessing of metagenomic datasets
- (2011) R. Schmieder et al. BIOINFORMATICS
- BIGSdb: Scalable analysis of bacterial genome variation at the population level
- (2011) Keith A Jolley et al. BMC BIOINFORMATICS
- BLAST Ring Image Generator (BRIG): simple prokaryote genome comparisons
- (2011) Nabil-Fareed Alikhan et al. BMC GENOMICS
- Aminoglycoside modifying enzymes
- (2010) Maria S. Ramirez et al. DRUG RESISTANCE UPDATES
- Mutations in the rpsL Gene Are Involved in Streptomycin Resistance in Campylobacter coli
- (2010) Satu Olkkola et al. Microbial Drug Resistance
- CampylobacterGenotyping to Determine the Source of Human Infection
- (2009) Samuel K. Sheppard et al. CLINICAL INFECTIOUS DISEASES
- Antibiotic resistance inCampylobacter: emergence, transmission and persistence
- (2009) Taradon Luangtongkum et al. Future Microbiology
- The RAST Server: Rapid Annotations using Subsystems Technology
- (2008) Ramy K Aziz et al. BMC GENOMICS
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