Review
Biochemistry & Molecular Biology
Sushma Subedi, Santanu Sasidharan, Niharika Nag, Prakash Saudagar, Timir Tripathi
Summary: Neurodegenerative diseases like Alzheimer's disease and Parkinson's disease are caused by misfolded protein aggregates, leading to inclusion bodies and plaques. Studies suggest that targeting common epitopes of interacting amyloid proteins could be a more effective therapeutic option. Understanding the molecular details of amyloid cross-seeding could provide insights for developing anti-amyloid therapeutics.
Article
Chemistry, Physical
Miaomiao Liu, Wenjuan Wang, Xiuping Hao, Xiaoyan Dong
Summary: Alzheimer's disease and type 2 diabetes mellitus show extensive correlation through cross-aggregation between related pathogenic peptides. This study investigates the cross-amyloid aggregation process of amyloid beta protein (A beta) and human islet amyloid polypeptide (hIAPP). The presence of seeds significantly changes the aggregation pathway, forming heterogeneous aggregates with increased cytotoxicity. Both solution and solid surface results demonstrate that seeds can induce rapid aggregation and promote the aggregation of heterogeneous monomers.
ACTA PHYSICO-CHIMICA SINICA
(2022)
Article
Biochemistry & Molecular Biology
Yijing Tang, Dong Zhang, Yonglan Liu, Yanxian Zhang, Yifan Zhou, Yung Chang, Bowen Zheng, Alice Xu, Jie Zheng
Summary: Amyloid cross-seeding and amyloid inhibition are two different research subjects that respectively study the co-aggregation and prevention of amyloid proteins, crucial for understanding various neurodegenerative diseases. A new preventive strategy demonstrated the cross-seeding phenomenon between different amyloid proteins and the potential reduced toxicity effect of such cross-seeding.
Article
Biochemistry & Molecular Biology
Kathryn J. C. Watt, Richard M. Meade, Robert J. Williams, Jody M. Mason
Summary: This study identified five peptides that have inhibitory effects on the aggregation of Parkinson's disease (PD) related protein variants. These peptides not only reduce the aggregation of PD-associated proteins, but also show the same efficacy when incubated with other variants. Additionally, the optimized peptide 4554W(N6A) is highly effective against wild-type protein and several single-point mutant forms, providing a suitable baseline for further PD therapeutic research.
ACS CHEMICAL NEUROSCIENCE
(2022)
Article
Chemistry, Multidisciplinary
Yijing Tang, Dong Zhang, Xiong Gong, Jie Zheng
Summary: This study demonstrates a rational design strategy of an amyloid-aggregation-induced emission (AIE)-active molecule, G7-TBA, which serves as a multiple-target, dual-function amyloid probe and modulator for detecting, monitoring, and altering amyloid aggregation of different amyloid proteins.
ADVANCED FUNCTIONAL MATERIALS
(2022)
Review
Engineering, Chemical
Yanxian Zhang, Yijing Tang, Dong Zhang, Yonglan Liu, Jian He, Yung Chang, Jie Zheng
Summary: The research focuses on the mechanism of amyloid cross-seeding between Aβ and hIAPP and its connection between AD and T2D, explores the role of structural compatibility and sequence similarity of amyloid proteins in cross-seeding, and proposes current challenges and future research directions in this less-studied field.
CHINESE JOURNAL OF CHEMICAL ENGINEERING
(2021)
Article
Biochemistry & Molecular Biology
Kamlesh M. Makwana, Matthew P. Sarnowski, Jiayuan Miao, Yu-Shan Lin, Juan R. Del Valle
Summary: The study introduces a minimalist approach to mimic the aggregation-prone modules within tau, showing efficacy in inhibiting tau fibril formation through a series of experiments.
ACS CHEMICAL NEUROSCIENCE
(2021)
Article
Neurosciences
Gowdame Lakshmanan Dharmaraj, Fraulein Denise Arigo, Kimberly A. Young, Ralph Martins, Ricardo L. Mancera, Prashant Bharadwaj
Summary: The study found that hIAPP analogues with non-aromatic residues reduce self-aggregation and neutralize the toxicity of Aβ(42).
JOURNAL OF ALZHEIMERS DISEASE
(2022)
Article
Biochemistry & Molecular Biology
Yijing Tang, Dong Zhang, Jie Zheng
Summary: This study demonstrates a repurposing strategy for an antimicrobial peptide, PG-1, as an amyloid inhibitor in Alzheimer's disease. PG-1 inhibits Aβ aggregation, disassembles preformed Aβ fibrils, reduces cytotoxicity, and preserves antimicrobial activity against various strains. This work introduces a promising approach to target multiple pathological pathways in AD.
ACS CHEMICAL NEUROSCIENCE
(2023)
Article
Chemistry, Physical
Ajamaluddin Malik, Javed Masood Khan, Abdullah S. Alhomida, Mohammad Shamsul Ola
Summary: Protein amyloid fibrils are supramolecular homopolymers that have various biological functions and connections to diseases such as type 2 diabetes. This study investigated the role of electrostatic interactions in surfactant-induced amyloid formation using insulin as a model protein. The results showed that SDS-induced amyloid formation was nucleation-independent at pH 2.0, and the solubilization was also instantaneous upon disruption of electrostatic interactions.
JOURNAL OF MOLECULAR LIQUIDS
(2023)
Article
Biochemistry & Molecular Biology
Katerina Konstantoulea, Patricia Guerreiro, Meine Ramakers, Nikolaos Louros, Liam D. Aubrey, Bert Houben, Emiel Michiels, Matthias De Vleeschouwer, Yulia Lampi, Luis F. Ribeiro, Joris Wit, Wei-Feng Xue, Joost Schymkowitz, Frederic Rousseau
Summary: The study found that proteins enriched in homologous sequences to Aβ aggregation-prone regions are present in Aβ plaques from AD patients, suggesting heterotypic amyloid interactions may occur. These proteins can modify Aβ assembly kinetics, fibril morphology, and deposition pattern in vitro. Additionally, it was discovered that transient expression of three of these proteins in an Aβ reporter cell line promotes Aβ amyloid aggregation, indicating a potential role of heterotypic APR interactions in amyloid-deposition diseases.
Review
Biochemistry & Molecular Biology
Satoru Itoh, Hisashi Okumura
Summary: Aggregates of amyloid-beta (Aβ) peptides are enhanced at hydrophilic-hydrophobic interfaces and inhibited by polyphenols. Aβ40 accelerates aggregation due to its beta-hairpin structure, while polyphenols inhibit Aβ(16-22) aggregation by forming hydrogen bonds.
INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES
(2021)
Article
Biochemistry & Molecular Biology
Michael H. M. Gropp, Courtney L. Klaips, F. Ulrich Hartl
Summary: This study investigated the mechanism of aggregate pathology in Huntington's disease using a yeast model, and revealed the role of cellular vulnerability to age-dependent proteostatic decline. The optogenetic aggregation of polyQ protein bypassed the requirement of prion-forming protein for aggregate formation, shedding light on the prion-mediated oligomer formation mechanism.
Review
Chemistry, Medicinal
Debabrata Maity
Summary: Aberrant protein aggregation is associated with the development of various diseases. Peptidomimetic approach can modulate the aggregation of amyloid proteins and holds promise for the development of anti-amyloid therapeutic agents.
Article
Multidisciplinary Sciences
Nadejda Koloteva-Levine, Liam D. Aubrey, Ricardo Marchante, Tracey J. Purton, Jennifer R. Hiscock, Mick F. Tuite, Wei-Feng Xue
Summary: Amyloid seeds are nanometer-sized protein particles that can accelerate amyloid formation through a surface catalysis mechanism without propagating the specific amyloid conformation associated with the seeds. This allows for cross-seeded assembly reactions involving nonhomologous proteins and rationalizes the molecular mechanism of the cross-seeding phenomenon as a manifestation of aberrant surface activities by amyloid seeds.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
(2021)
Article
Geriatrics & Gerontology
Jie Zhang, Eun S. Park, Hye-Jin Park, Run Yan, Magda Grudniewska, Xiaopei Zhang, Stephanie Oh, Xue Yang, Jean Baum, M. Maral Mouradian
NEUROBIOLOGY OF AGING
(2020)
Article
Biochemistry & Molecular Biology
Tjasa Frelih, Baifan Wang, Janez Plavec, Primoz Sket
NUCLEIC ACIDS RESEARCH
(2020)
Article
Biotechnology & Applied Microbiology
Nanxia Zhao, Xue Yang, Hannah R. Calvelli, Yue Cao, Nicola L. Francis, Rebecca A. Chmielowski, Laurie B. Joseph, Zhiping P. Pang, Kathryn E. Uhrich, Jean Baum, Prabhas Moghe
FRONTIERS IN BIOENGINEERING AND BIOTECHNOLOGY
(2020)
Article
Biochemistry & Molecular Biology
Baifan Wang, Zijuan Zhang, Hao Zhu, Congwei Niu, Xin Wen, Zhen Xi
Summary: This study found that the hydrogen-bonding network around Arg59 in protoporphyrinogen IX oxidase is crucial for enzyme activity, maintaining the substrate binding chamber and stabilizing the micro-environment of the FAD isoalloxazine ring to enhance substrate-FAD interaction.
BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS
(2021)
Article
Biochemistry & Molecular Biology
Jonathan K. Williams, Baifan Wang, Andrew Sam, Cody L. Hoop, David A. Case, Jean Baum
Summary: Through molecular dynamics simulations, researchers have found that the receptor-binding domain of the SARS-CoV-2 virus exhibits local dynamic flexibility in the unbound state, with mutations in the Loop 3 region having no effect on this flexibility. They have identified novel unbound substates of the RBD that are lower energy than the ACE2-bound conformation, potentially serving as new targets for therapeutic design.
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS
(2022)
Article
Multidisciplinary Sciences
Baifan Wang, Yinwu He, Xin Wen, Zhen Xi
Summary: This study used the MB-QSAR method to predict drug resistance in HIV-1 protease mutants and elucidate structure resistance relationships. The method offers a fast and accurate prediction of drug resistance caused by mutations, and provides guidance for the design of resistance evading drugs.
SCIENTIFIC REPORTS
(2022)
Article
Biochemistry & Molecular Biology
Tamr B. Atieh, Jonathan Roth, Xue Yang, Cody L. Hoop, Jean Baum
Summary: This study reveals the interaction mechanism between glycated alpha-synuclein and DJ-1, showing that DJ-1 can scavenge glycated alpha-synuclein oligomers, inhibit interactions between monomers and oligomers, and release free monomers. This mechanism helps suppress the propagation of toxic oligomers and fibril species.
Article
Agriculture, Multidisciplinary
Di Zhang, Nuo Zhou, Li-Jun Yang, Zhi-Lei Yu, De-Jun Ma, Da-Wei Wang, Yong-Hong Li, Bin Liu, Bai-Fan Wang, Han Xu, Zhen Xi
Summary: This study used a combination of structure-based virtual screening, structure-guided optimization, and biological evaluation to discover a highly potent PDS inhibitor with a novel chemical structure. The inhibitor showed a broader spectrum of herbicidal activity against six types of weeds compared to a commercial PDS inhibitor. The compound also exhibited a similar affinity to PDS and induced mRNA reduction and phytoene accumulation. Additionally, it caused an increase in reactive oxygen species and changes in ROS-associated enzyme activity in albino leaves.
JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY
(2022)
Article
Nuclear Science & Technology
Huan Jia, Haihua Niu, Han-Jie Cai, Chenzhang Yuan, Xunchao Zhang, Yuanshuai Qin, Hongming Xie, Baifan Wang, Peng Zhang, Yuxuan Huang, Tieming Zhu, Tianji Peng, Weilong Chen, Qingwei Chu, Jianqiang Wu, Shenghu Zhang, Xiang Li, Duanyang Jia, Bin Zhang, Yuan He, Hongwei Zhao, Wenlong Zhan
Summary: The Chinese Accelerator Front end (CAFe) is a demo superconducting proton linac designed for an accelerator-driven subcritical system. It aims to demonstrate the 10-mA ability of a full superconducting linac in the low-energy region. A new 200-kW beam dump has been developed to enable high-power beam commissioning of CAFe. The dump withstood a 200-kW proton beam power and collected a total charge of 2049 mAh.
NUCLEAR SCIENCE AND ENGINEERING
(2023)
Article
Chemistry, Multidisciplinary
Wang Baifan, He Yinwu, Wen Xin, Niu Congwei, Xi Zhen
Summary: Flumetsulam is a widely used herbicide targeting AHAS, but mutations in AHAS can cause herbicide resistance. This study established a method called MB-QSAR to quantitatively predict drug resistance caused by mutations in AHAS and elucidate the structure-resistance relationships. The MB-QSAR model showed excellent correlation between experimental and computational data, providing good predictions for the inhibition properties of flumetsulam against AHAS mutants. The model also provided insight into potential positions for herbicide resistant mutations and guidance for modifying and designing new resistance-evading herbicides.
ACTA CHIMICA SINICA
(2022)