From the Andes to the desert: 16S rRNA metabarcoding characterization of aquatic bacterial communities in the Rimac river, the main source of water for Lima, Peru

Next generation sequencing approaches to evaluate water and wastewater quality

(2021) Emily Garner et al.   WATER RESEARCH

Bacteria from the genus Arcobacter are abundant in effluent from wastewater treatment plants

(2020) Jannie Munk Kristensen et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Piphillin predicts metagenomic composition and dynamics from DADA2-corrected 16S rDNA sequences

(2020) Nicole R. Narayan et al.   BMC GENOMICS

Nutrimetabolomics reveals food-specific compounds in urine of adults consuming a DASH-style diet

(2020) Nichole A. Reisdorph et al.   Scientific Reports

Bacterial community composition and potential pathogens along the Pinheiros River in the southeast of Brazil

(2020) Rafaela Garrido Godoy et al.   Scientific Reports

Seasonal dynamics of lotic bacterial communities assessed by 16S rRNA gene amplicon deep sequencing

(2020) Lisa Paruch et al.   Scientific Reports

The effect of 16S rRNA region choice on bacterial community metabarcoding results

(2019) Yu. S. Bukin et al.   Scientific Data

Nonlinear growth models: An alternative to ANOVA in tomato trials evaluation

(2019) Bruno Giacomini Sari et al.   EUROPEAN JOURNAL OF AGRONOMY

Denitrification performance and microbial diversity of immobilized bacterial consortium treating nitrate micro-polluted water

(2019) Yalan Gan et al.   BIORESOURCE TECHNOLOGY

Diversity and abundance of bacterial pathogens in urban rivers impacted by domestic sewage

(2019) Qijia Cui et al.   ENVIRONMENTAL POLLUTION

Prevalence of Arcobacter and Other Pathogenic Bacteria in River Water in Nepal

(2019) Rajani Ghaju Shrestha et al.   Water

Next-generation sequencing reveals fecal contamination and potentially pathogenic bacteria in a major inflow river of Taihu Lake

(2019) Kiran Kumar Vadde et al.   ENVIRONMENTAL POLLUTION

Stream water quality assessment by metabarcoding of invertebrates

(2019) Franziska Kuntke et al.   ECOLOGICAL INDICATORS

Occurrence and molecular characterization of Giardia duodenalis cysts and Cryptosporidium oocysts in raw water samples from the Rímac River, Peru

(2018) Meylin Bautista et al.   ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH

Metagenomic analysis using 16S ribosomal RNA genes of a bacterial community in an urban stream, the Tama River, Tokyo

(2018) Md. Shaheed Reza et al.   FISHERIES SCIENCE

Particulate matter levels in a South American megacity: the metropolitan area of Lima-Callao, Peru

(2017) Jose Silva et al.   ENVIRONMENTAL MONITORING AND ASSESSMENT

Deciphering conjugative plasmid permissiveness in wastewater microbiomes

(2017) Samuel Jacquiod et al.   MOLECULAR ECOLOGY

Dynamic microbial populations along the Cuyahoga River

(2017) Matthew V. Cannon et al.   PLoS One

First isolation report of Arcobacter cryaerophilus from a human diarrhea sample in Costa Rica

(2017) Karol Barboza et al.   REVISTA DO INSTITUTO DE MEDICINA TROPICAL DE SAO PAULO

A Community Multi-Omics Approach towards the Assessment of Surface Water Quality in an Urban River System

(2017) David Beale et al.   International Journal of Environmental Research and Public Health

DADA2: High-resolution sample inference from Illumina amplicon data

(2016) Benjamin J Callahan et al.   NATURE METHODS

Resilience of bacterial quorum sensing against fluid flow

(2016) Philippe Emge et al.   Scientific Reports

Piphillin: Improved Prediction of Metagenomic Content by Direct Inference from Human Microbiomes

(2016) Shoko Iwai et al.   PLoS One

Error filtering, pair assembly and error correction for next-generation sequencing reads

(2015) Robert C. Edgar et al.   BIOINFORMATICS

Insights in the pathogenesis and resistance ofArcobacter: A review

(2015) Susana Ferreira et al.   CRITICAL REVIEWS IN MICROBIOLOGY

Emerging flavobacterial infections in fish: A review

(2015) Thomas P. Loch et al.   Journal of Advanced Research

Flavobacterium branchiophilumandF. succinicansassociated with bacterial gill disease in rainbow troutOncorhynchus mykiss(Walbaum) in water recirculation aquaculture systems

(2014) C Good et al.   JOURNAL OF FISH DISEASES

Functional metagenomic analysis reveals rivers are a reservoir for diverse antibiotic resistance genes

(2014) G.C.A. Amos et al.   VETERINARY MICROBIOLOGY

Waste Not, Want Not: Why Rarefying Microbiome Data Is Inadmissible

(2014) Paul J. McMurdie et al.   PLoS Computational Biology

Population dynamics and ecology of Arcobacter in sewage

(2014) Jenny C. Fisher et al.   Frontiers in Microbiology

Application of metabolomics to understanding biofilms in water distribution systems: a pilot study

(2013) D.J. Beale et al.   BIOFOULING

phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data

(2013) Paul J. McMurdie et al.   PLoS One

Checking Normality and Homoscedasticity in the General Linear Model Using Diagnostic Plots

(2011) A. Schützenmeister et al.   COMMUNICATIONS IN STATISTICS-SIMULATION AND COMPUTATION

Rethinking microbial diversity analysis in the high throughput sequencing era

(2011) Leandro N. Lemos et al.   JOURNAL OF MICROBIOLOGICAL METHODS

Occurrence and diversity of Arcobacter spp. along the Llobregat River catchment, at sewage effluents and in a drinking water treatment plant

(2010) Luis Collado et al.   WATER RESEARCH

Low Taxon Richness of Bacterioplankton in High-Altitude Lakes of the Eastern Tibetan Plateau, with a Predominance of Bacteroidetes and Synechococcus spp.

(2009) P. Xing et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Diversity and population structure of sewage-derived microorganisms in wastewater treatment plant influent

(2009) S. L. McLellan et al.   ENVIRONMENTAL MICROBIOLOGY

Glutathione transferases in bacteria

(2008) Nerino Allocati et al.   FEBS Journal

Bacterial ‘cosmopolitanism’ and importance of local environmental factors for community composition in remote high-altitude lakes

(2008) RUBEN SOMMARUGA et al.   FRESHWATER BIOLOGY