Genome-wide association study between copy number variants and hoof health traits in Holstein dairy cattle

Concordance rate between copy number variants detected using either high- or medium-density single nucleotide polymorphism genotype panels and the potential of imputing copy number variants from flanking high density single nucleotide polymorphism haplotypes in cattle

(2020) Pierce Rafter et al.   BMC GENOMICS

High confidence copy number variants identified in Holstein dairy cattle from whole genome sequence and genotype array data

(2020) Adrien M. Butty et al.   Scientific Reports

Array CGH-based detection of CNV regions and their potential association with reproduction and other economic traits in Holsteins

(2019) Mei Liu et al.   BMC GENOMICS

Optimizing Selection of the Reference Population for Genotype Imputation From Array to Sequence Variants

(2019) Adrien M. Butty et al.   Frontiers in Genetics

POPDC3 Gene Variants Associate with a New Form of Limb Girdle Muscular Dystrophy

(2019) John Vissing et al.   ANNALS OF NEUROLOGY

Genome-wide copy number variant analysis reveals variants associated with 10 diverse production traits in Holstein cattle

(2018) Yang Zhou et al.   BMC GENOMICS

Genomic predictions combining SNP markers and copy number variations in Nellore cattle

(2018) El Hamidi A. Hay et al.   BMC GENOMICS

Invited review: Genetics and claw health: Opportunities to enhance claw health by genetic selection

(2018) B. Heringstad et al.   JOURNAL OF DAIRY SCIENCE

Ensembl 2019

(2018) Fiona Cunningham et al.   NUCLEIC ACIDS RESEARCH

Analysis of copy number variations in Holstein-Friesian cow genomes based on whole-genome sequence data

(2017) M. Mielczarek et al.   JOURNAL OF DAIRY SCIENCE

Genetic parameters for hoof health traits estimated with linear and threshold models using alternative cohorts

(2017) F. Malchiodi et al.   JOURNAL OF DAIRY SCIENCE

A genome wide association study between CNVs and quantitative traits in Brown Swiss cattle

(2017) R.T.M.M. Prinsen et al.   Livestock Science

Genome-wide identification of copy number variation using high-density single-nucleotide polymorphism array in Japanese Black cattle

(2016) Shinji Sasaki et al.   BMC GENETICS

Metabolic Reprogramming Regulates the Proliferative and Inflammatory Phenotype of Adventitial Fibroblasts in Pulmonary Hypertension Through the Transcriptional Corepressor C-Terminal Binding Protein-1Clinical Perspective

(2016) Min Li et al.   CIRCULATION

Genome-wide association study for milk somatic cell score in holstein cattle using copy number variation as markers

(2016) M. Durán Aguilar et al.   JOURNAL OF ANIMAL BREEDING AND GENETICS

Associated effects of copy number variants on economically important traits in Spanish Holstein dairy cattle

(2016) Neila Ben Sassi et al.   JOURNAL OF DAIRY SCIENCE

Olfactory Receptors in Non-Chemosensory Organs: The Nervous System in Health and Disease

(2016) Isidro Ferrer et al.   Frontiers in Aging Neuroscience

An integrated map of structural variation in 2,504 human genomes

(2015) Peter H. Sudmant et al.   NATURE

Whole-genome CNV analysis: advances in computational approaches

(2015) Mehdi Pirooznia et al.   Frontiers in Genetics

Genome-Wide Study of Structural Variants in Bovine Holstein, Montbéliarde and Normande Dairy Breeds

(2015) Mekki Boussaha et al.   PLoS One

Evaluation of variant identification methods for whole genome sequencing data in dairy cattle

(2014) Christine F Baes et al.   BMC GENOMICS

Genome wide CNV analysis reveals additional variants associated with milk production traits in Holsteins

(2014) Lingyang Xu et al.   BMC GENOMICS

The role of bovine γδ T cells and their WC1 co-receptor in response to bacterial pathogens and promoting vaccine efficacy: A model for cattle and humans

(2014) Cynthia L. Baldwin et al.   VETERINARY IMMUNOLOGY AND IMMUNOPATHOLOGY

The challenges and importance of structural variation detection in livestock

(2014) Derek M. Bickhart et al.   Frontiers in Genetics

RNA sequencing to study gene expression and single nucleotide polymorphism variation associated with citrate content in cow milk

(2013) A. Cánovas et al.   JOURNAL OF DAIRY SCIENCE

Genetic parameters for hoof lesions and their relationship with feet and leg traits in Canadian Holstein cows

(2013) N. Chapinal et al.   JOURNAL OF DAIRY SCIENCE

ParseCNV integrative copy number variation association software with quality tracking

(2013) Joseph T. Glessner et al.   NUCLEIC ACIDS RESEARCH

Global assessment of genomic variation in cattle by genome resequencing and high-throughput genotyping

(2011) Bujie Zhan et al.   BMC GENOMICS

Whole genome resequencing of black Angus and Holstein cattle for SNP and CNV discovery

(2011) Paul Stothard et al.   BMC GENOMICS

Genomic characteristics of cattle copy number variations

(2011) Yali Hou et al.   BMC GENOMICS

Genome structural variation discovery and genotyping

(2011) Can Alkan et al.   NATURE REVIEWS GENETICS

Mapping of INS promoter interactions reveals its role in long-range regulation of SYT8 transcription

(2011) Zhixiong Xu et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Ensembl BioMarts: a hub for data retrieval across taxonomic space

(2011) R. J. Kinsella et al.   Database-The Journal of Biological Databases and Curation

Fine Mapping of a QTL for Fertility on BTA7 and Its Association With a CNV in the Israeli Holsteins

(2011) Giora Glick et al.   G3-Genes Genomes Genetics

Copy number variation in the bovine genome

(2010) João Fadista et al.   BMC GENOMICS

GeneCards Version 3: the human gene integrator

(2010) M. Safran et al.   Database-The Journal of Biological Databases and Curation

Designing Genome-Wide Association Studies: Sample Size, Power, Imputation, and the Choice of Genotyping Chip

(2009) Chris C. A. Spencer et al.   PLoS Genetics

A whole-genome assembly of the domestic cow, Bos taurus

(2009) Aleksey V Zimin et al.   GENOME BIOLOGY

Invited Review: Reliability of genomic predictions for North American Holstein bulls

(2008) P.M. VanRaden et al.   JOURNAL OF DAIRY SCIENCE

Adjustment of genomic waves in signal intensities from whole-genome SNP genotyping platforms

(2008) Sharon J. Diskin et al.   NUCLEIC ACIDS RESEARCH

High-throughput functional annotation and data mining with the Blast2GO suite

(2008) S. Gotz et al.   NUCLEIC ACIDS RESEARCH