Article
Immunology
Lidewij W. Ruemke, Wouter L. Smit, Ailko Bossink, Gijs J. M. Limonard, Danya Muilwijk, Lenneke E. M. Haas, Chantal Reusken, Sanne van der Wal, Bing J. Thio, Yvonne M. G. van Os, Hendrik Gremmels, Jeffrey M. Beekman, Monique Nijhuis, Annemarie M. J. Wensing, Michiel Heron, Steven F. T. Thijsen
Summary: This study longitudinally characterized cellular immune responses in COVID-19 patients, and found that severe patients had impaired early IFN-γ-secreting virus-specific T-cell responses compared to moderate patients. In addition, a substantial proportion of T-cell response was directed against the conserved membrane protein, which may have implications for diagnostics and vaccine design. These findings further support the role of dysregulated adaptive immunity in COVID-19 immunopathogenesis.
FRONTIERS IN IMMUNOLOGY
(2023)
Article
Immunology
Alessandra Aiello, Adriano Grossi, Silvia Meschi, Marcello Meledandri, Valentina Vanini, Linda Petrone, Rita Casetti, Gilda Cuzzi, Andrea Salmi, Anna Maria Altera, Luca Pierelli, Gina Gualano, Tommaso Ascoli Bartoli, Concetta Castilletti, Chiara Agrati, Enrico Girardi, Fabrizio Palmieri, Emanuele Nicastri, Enrico Di Rosa, Delia Goletti
Summary: This study aimed to characterize the early immune responses to SARS-CoV-2 infection in household contacts of COVID-19 cases. The findings showed that plasmatic IFN-alpha and IFN-gamma T-cell specific response could appear early in the absence of seroconversion, and had a higher positivity rate compared to the serological response in individuals with positive swabs.
FRONTIERS IN IMMUNOLOGY
(2022)
Article
Infectious Diseases
Alessandra Aiello, Saeid Najafi Fard, Elisa Petruccioli, Linda Petrone, Valentina Vanini, Chiara Farroni, Gilda Cuzzi, Assunta Navarra, Gina Gualano, Silvia Mosti, Luca Pierelli, Emanuele Nicastri, Delia Goletti
Summary: The whole-blood platform was used to detect a SARS-CoV-2-specific T cell response, with pool S and MegaPool being the most potent immunogenic stimuli. The assay showed good sensitivity and high specificity, making it a powerful diagnostic tool for clinical laboratories.
INTERNATIONAL JOURNAL OF INFECTIOUS DISEASES
(2021)
Article
Medicine, Research & Experimental
Byoung Kwon Park, Jinsoo Kim, Sangkyu Park, Dongbum Kim, Minyoung Kim, Kyeongbin Baek, Joon-Yong Bae, Man-Seong Park, Won-Keun Kim, Younghee Lee, Hyung-Joo Kwon
Summary: This study identified a direct interaction between the S protein and the N protein of MERS-CoV during virus assembly in infected cells, and demonstrated that Spike CD peptides of MERS-CoV inhibit this interaction. Additionally, cell penetration by synthetic Spike CD peptides inhibits viral plaque formation in MERS-CoV-infected cells.
Article
Virology
Yinghua Zhao, Liyan Sui, Ping Wu, Letian Li, Li Liu, Baohua Ma, Wenfang Wang, Hongmiao Chi, Ze-Dong Wang, Zhengkai Wei, Zhijun Hou, Kaiyu Zhang, Junqi Niu, Ningyi Jin, Chang Li, Jixue Zhao, Guoqing Wang, Quan Liu
Summary: This study investigates the mechanisms by which SARS-CoV-2 inhibits the host's antiviral responses. The researchers found that the virus's nucleocapsid protein suppresses interferon responses by inhibiting the expression of the transcription factor EGR1. Furthermore, they discovered that EGR1 promotes the expression of the antiviral protein IRAV, which induces the degradation of the nucleocapsid protein through the E3 ubiquitin ligase MARCH8. This finding highlights the importance of understanding host restriction factors in developing effective treatments for COVID-19.
JOURNAL OF VIROLOGY
(2023)
Article
Immunology
Vassiliki C. Pitiriga, Myrto Papamentzelopoulou, Kanella E. Konstantinakou, Kalliopi Theodoridou, Irene V. Vasileiou, Athanasios Tsakris
Summary: The study compared the levels of T cell responses to SARS-CoV-2 between cohorts of subjects with hybrid immunity, vaccinated naive subjects, and convalescent unvaccinated subjects. The findings suggest that natural cellular immunity, either alone or combined with vaccination, confers stronger and more durable protection compared to vaccine-induced cellular immunity.
Article
Immunology
Noe Juvenal Mendoza-Ramirez, Julio Garcia-Cordero, Sandra Paola Martinez-Frias, Daniela Roa-Velazquez, Rosendo Luria-Perez, Jose Bustos-Arriaga, Jesus Hernandez-Lopez, Carlos Cabello-Gutierrez, Joaquin Alejandro Zuniga-Ramos, Edgar Morales-Rios, Sonia Mayra Perez-Tapia, Martha Espinosa-Cantellano, Leticia Cedillo-Barron
Summary: This study analyzes the combination of two SARS-CoV-2 viral antigens and finds that immunization with a combination of S1 or RBD and the N protein can elicit a stronger immune response. The sera from immunized mice can recognize different variants of SARS-CoV-2. This study identifies potential antigens for the second generation of COVID-19 vaccines.
Article
Immunology
Yasemin Cosgun, Nergis Emanet, Ayten Oz Kamiloglu, Evelin Grage-Griebenow, Susann Hohensee, Sandra Saschenbrecker, Katja Steinhagen, Gulay Korukluoglu
Summary: This study analyzes the short-term humoral responses against the SARS-CoV-2 spike and nucleocapsid protein in 50 Turkish adults after CoronaVac immunization. The results showed that two doses of CoronaVac vaccine significantly increased antibodies against the spike protein and nucleocapsid. The responses to the spike protein were stronger than those to the nucleocapsid.
Article
Microbiology
Jeremy D. Ward, Caleb Cornaby, John L. Schmitz
Summary: Severely ill COVID-19 patients show reduced IFN-γ levels and T cells unable to produce IFN-γ when stimulated with PHA, along with elevated IL-6 levels.
JOURNAL OF CLINICAL MICROBIOLOGY
(2021)
Article
Biochemical Research Methods
Qiyong Cai, Jingjing Mu, Yang Lei, Jia Ge, Aaron Albert Aryee, Xiaoge Zhang, Zhaohui Li
Summary: A new ultrasensitive, rapid, and duplex digital enzyme-linked immunosorbent assay (dELISA) has been developed for simultaneous detection of SARS-CoV-2 spike (S-RBD) and nucleocapsid (N) proteins based on a single molecule array, offering high sensitivity and specificity to improve the diagnosis accuracy of COVID-19.
ANALYTICAL AND BIOANALYTICAL CHEMISTRY
(2021)
Article
Biochemistry & Molecular Biology
Zhengcun Wu, Xiuao Zhang, Zhangqiong Huang, Kaili Ma
Summary: The study confirmed the direct interaction between SARS-CoV-2 proteins and the key protein alpha-Syn in Parkinson's disease. It was discovered that SARS-CoV-2 proteins can accelerate the aggregation of alpha-Syn, leading to the development of Parkinson's disease in the context of COVID-19.
INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES
(2022)
Article
Infectious Diseases
Hari Ram Choudhary, Debaprasad Parai, Girish Chandra Dash, Annalisha Peter, Subrat Kumar Sahoo, Matrujyoti Pattnaik, Usha Kiran Rout, Rashmi Ranjan Nanda, Sanghamitra Pati, Debdutta Bhattacharya
Summary: By following up with 76 individuals who tested positive for SARS-CoV-2 infection for 16 weeks, it was found that antibodies against nucleocapsid antigen protein showed a waning trend but did not completely disappear. Some individuals became seronegative in qualitative assays, yet all remained positive in quantitative testing.
Article
Immunology
Kanagavel Murugesan, Prasanna Jagannathan, Tho D. Pham, Suchitra Pandey, Hector F. Bonilla, Karen Jacobson, Julie Parsonnet, Jason R. Andrews, Daniela Weiskopf, Alessandro Sette, Benjamin A. Pinsky, Upinder Singh, Niaz Banaei
Summary: The study found that the interferon-gamma release assay (IGRA) accurately distinguished between convalescent and uninfected healthy blood donors, with a predominantly CD4(+) T-cell response. Therefore, SARS-CoV-2 IGRA may serve as a useful diagnostic tool in managing the coronavirus disease 2019 pandemic.
CLINICAL INFECTIOUS DISEASES
(2021)
Article
Microbiology
Carmen L. Charlton, Leonard T. Nguyen, Ashley Bailey, Jayne Fenton, Sabrina S. Plitt, Carol Marohn, Cheryl Lau, Deena Hinshaw, Christie Lutsiak, Kimberley Simmonds, Jamil N. Kanji, Nathan Zelyas, Nelson Lee, Michael Mengel, Graham Tipples
Summary: This study systematically evaluated the SARS-CoV-2 IgG positivity in a provincial cohort in Alberta, Canada. The results showed differences in seropositivity among different age groups, genders, income levels, and population densities.
MICROBIOLOGY SPECTRUM
(2021)
Article
Infectious Diseases
Alessandra Aiello, Andrea Coppola, Valentina Vanini, Linda Petrone, Gilda Cuzzi, Andrea Salmi, Anna Maria Gerarda Altera, Carla Tortorella, Gina Gualano, Claudio Gasperini, Palma Scolieri, Alessia Beccacece, Serena Vita, Vincenzo Bruzzese, Roberto Lorenzetti, Fabrizio Palmieri, Emanuele Nicastri, Delia Goletti
Summary: This study characterized the SARS-CoV-2-specific T cell response using the QuantiFERON SARS-CoV-2 assay compared with a homemade interferon (IFN)-gamma release assay (IGRA). The results showed that the QuantiFERON assay detected T cell responses mediated by both CD4(+) and CD8(+) T cells, while the homemade IGRA-SPIKE test had a higher response rate.
INTERNATIONAL JOURNAL OF INFECTIOUS DISEASES
(2022)
Article
Multidisciplinary Sciences
Valentina Ramos, Pablo Pazmino, Antonio Franco-Crespo, Carlos Ramos-Galarza, Eduardo Tejera
Summary: Comparative organizational network analysis reveals no significant differences between organizations in terms of formal power network behavior, but significant differences exist when considering the hierarchy of workers.
Editorial Material
Veterinary Sciences
Federico Carlos Blanco, Christophe J. Queval, Flabio R. Araujo, Jacobus Henri De Waard
FRONTIERS IN VETERINARY SCIENCE
(2022)
Article
Multidisciplinary Sciences
Kris E. Siegers, Antonius E. van Herwaarden, Jacobus H. de Waard, Berenice Del Nogal, Peter W. M. Hermans, Doorlene van Tienoven, Guy A. M. Berbers, Marien de Jonge, Lilly M. Verhagen
Summary: This study found that metabolic hormones, especially adiponectin, may modify the effect of nutritional status on pneumococcal vaccine response. These findings emphasize the importance of further research to better understand the immunometabolic pathways underlying vaccine response and enable optimal personalized vaccination schedules.
Review
Microbiology
Carlos Bastidas-Caldes, Jacobus H. de Waard, Maria Soledad Salgado, Maria Jose Villacis, Marco Coral-Almeida, Yoshimasa Yamamoto, Manuel Calvopina
Summary: This study investigated the global prevalence and distribution of mcr in E. coli isolated from healthy humans, chickens, and pigs. The findings revealed a widespread distribution of mcr genes in E. coli isolates from the selected reservoirs across all continents. Understanding the epidemiology and occurrence of mcr in different continents facilitates tracing the transmission of mcr genes and determining the infection risks for humans. This knowledge can be used to reduce the incidence of zoonotic transmission by implementing appropriate control programs.
Article
Infectious Diseases
Franklin Claro, Douglas Silva, Jesus A. Perez Bogado, Hector Rafael Rangel, Jacobus H. de Waard
Summary: This study evaluated the long-term immunogenicity of the Sputnik V vaccine and found that it can provide long-lasting humoral immunity, especially for individuals who have been vaccinated and previously infected with SARS-CoV-2.
INTERNATIONAL JOURNAL OF INFECTIOUS DISEASES
(2022)
Article
Microbiology
Yanua Ledesma, Gustavo Echeverria, Franklin E. Claro-Almea, Douglas Silva, Salome Guerrero-Freire, Yeimy Rojas, Carlos Bastidas-Caldes, Juan Carlos Navarro, Jacobus H. de Waard
Summary: Clinical laboratories face challenges in identifying non-tuberculous mycobacteria at the species level, and a phylogenetic method using 16S rDNA sequences can help with their identification.
Article
Genetics & Heredity
German Burgos, Katherin Barrionuevo-Perez, Tomas Restrepo, Eduardo Tejera, Jacobus H. de Waard, Alejandra Garzon-Salazar, Leonor Gusmao
Summary: In this study, a new molecular sex determination method based on Y-specific targets was developed, using loop-mediated DNA amplification technology to achieve fast detection with high sensitivity and specificity.
FORENSIC SCIENCE INTERNATIONAL GENETICS SUPPLEMENT SERIES
(2022)
Article
Microbiology
Gustavo Echeverria, Veronica Rueda, Wilson Espinoza, Carlos Rosero, Martin J. Zumarraga, Jacobus H. H. de Waard
Summary: This report presents three cases of misdiagnosed NTM lung infections in Ecuador, highlighting the importance of accurate diagnosis through culture and identification to species level. Reporting NTM pulmonary disease as a notifiable disease is recommended to obtain accurate prevalence data.
Article
Veterinary Sciences
David Vasco-Julio, Dayana Aguilar, Alexander Maldonado, Euclides de la Torre, Maria Soledad Cisneros-Montufar, Carlos Bastidas-Caldes, Juan-Carlos Navarro, Jacobus H. de Waard
Summary: In 2018, there was an outbreak of vesicular stomatitis in Ecuador, primarily affecting cattle and swine. The virus showed different transmission patterns in different regions of Ecuador. Transmission in the Amazon region was likely vector-borne, while transmission in the Andean and Coastal regions was caused by the movement of livestock and/or fomites. Further research into vectors and vertebrate reservoirs is recommended to understand the mechanisms of virus reemergence.
VETERINARY SCIENCES
(2023)
Article
Immunology
Zaida Araujo, Milena Camargo, Darwin A. Moreno Perez, Albina Wide, Dailobivxon Pacheco, Diana Diaz Arevalo, Carmen T. Celis Giraldo, Sandra Salas, Jacobus H. de Waard, Manuel A. Patarroyo
Summary: NRAMP1 and VDR gene polymorphisms are associated with susceptibility to tuberculosis, and the NRAMP1-D543N-A/A genotype is significantly associated with tuberculosis in the indigenous Warao Amerindian population.
Article
Veterinary Sciences
Maria P. Huilca-Ibarra, David Vasco-Julio, Yanua Ledesma, Salome Guerrero-Freire, Jeannete Zurita, Pablo Castillejo, Francisco Barcelo Blasco, Lisseth Yanez, Darwin Changoluisa, Gustavo Echeverria, Carlos Bastidas-Caldes, Jacobus H. de Waard
Summary: This study confirms the presence of Prototheca bovis in cows with mastitis in Ecuador and evaluates its infection rate. The detection and disinfection methods for P.bovis are discussed, and recommendations to increase diagnostic yield are proposed.
VETERINARY SCIENCES
(2022)
Article
Biochemistry & Molecular Biology
Zaida Araujo, Jacobus H. de Waard, Milena Camargo, Juan Ernesto Lopez-Ramos, Carlos Fernandez de Larrea, Magnolia Vanegas, Manuel A. Patarroyo
Summary: This study demonstrates the potential of serological response to synthetic peptides from Mycobacterium tuberculosis antigens for distinguishing between active tuberculosis and latent tuberculosis infection in Warao Amerindians.
INTERNATIONAL JOURNAL OF PEPTIDE RESEARCH AND THERAPEUTICS
(2022)