Comparative transcriptome analyses for metribuzin tolerance provide insights into key genes and mechanisms restoring photosynthetic efficiency in bread wheat (Triticum aestivum L.)

QTL Mapping Using a High-Density Genetic Map to Identify Candidate Genes Associated With Metribuzin Tolerance in Hexaploid Wheat (Triticum aestivum L.)

(2020) Ling Xu et al.   Frontiers in Plant Science

PolyMorphPredict: A Universal Web-Tool for Rapid Polymorphic Microsatellite Marker Discovery From Whole Genome and Transcriptome Data

(2019) Ritwika Das et al.   Frontiers in Plant Science

Development of an Agrobacterium -delivered CRISPR/Cas9 system for wheat genome editing

(2019) Zhengzhi Zhang et al.   PLANT BIOTECHNOLOGY JOURNAL

Inheritance of pre-emergent metribuzin tolerance and putative gene discovery through high-throughput SNP array in wheat (Triticum aestivum L.)

(2019) Roopali Bhoite et al.   BMC PLANT BIOLOGY

Genetic and signalling pathways of dry fruit size: targets for genome editing‐based crop improvement

(2019) Quaid Hussain et al.   PLANT BIOTECHNOLOGY JOURNAL

Genome-Wide Characterization of bHLH Genes in Grape and Analysis of their Potential Relevance to Abiotic Stress Tolerance and Secondary Metabolite Biosynthesis

(2018) Pengfei Wang et al.   Frontiers in Plant Science

Identification and validation of QTL and their associated genes for pre-emergent metribuzin tolerance in hexaploid wheat (Triticum aestivum L.)

(2018) Roopali Bhoite et al.   BMC GENETICS

Efficient C-to-T base editing in plants using a fusion of nCas9 and human APOBEC3A

(2018) Yuan Zong et al.   NATURE BIOTECHNOLOGY

Glyphosate-induced oxidative stress in Arabidopsis thaliana affecting peroxisomal metabolism and triggers activity in the oxidative phase of the pentose phosphate pathway (OxPPP) involved in NADPH generation

(2017) Larisse de Freitas-Silva et al.   JOURNAL OF PLANT PHYSIOLOGY

Identification of new metribuzin-tolerant wheat (Triticum spp.) genotypes

(2017) Roopali N. Bhoite et al.   Crop & Pasture Science

SOAPnuke: a MapReduce acceleration-supported software for integrated quality control and preprocessing of high-throughput sequencing data

(2017) Yuxin Chen et al.   GigaScience

StringTie enables improved reconstruction of a transcriptome from RNA-seq reads

(2015) Mihaela Pertea et al.   NATURE BIOTECHNOLOGY

HISAT: a fast spliced aligner with low memory requirements

(2015) Daehwan Kim et al.   NATURE METHODS

NAC transcription factors in plant multiple abiotic stress responses: progress and prospects

(2015) Hongbo Shao et al.   Frontiers in Plant Science

Fast and sensitive protein alignment using DIAMOND

(2014) Benjamin Buchfink et al.   NATURE METHODS

The transcriptional regulatory network in the drought response and its crosstalk in abiotic stress responses including drought, cold, and heat

(2014) Kazuo Nakashima et al.   Frontiers in Plant Science

Crops that feed the world 10. Past successes and future challenges to the role played by wheat in global food security

(2013) Bekele Shiferaw et al.   Food Security

Recent Progress Using High-throughput Sequencing Technologies in Plant Molecular BreedingF

(2012) Qiang Gao et al.   Journal of Integrative Plant Biology

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks

(2012) Cole Trapnell et al.   Nature Protocols

Primer3—new capabilities and interfaces

(2012) Andreas Untergasser et al.   NUCLEIC ACIDS RESEARCH

NAC proteins: regulation and role in stress tolerance

(2012) Swati Puranik et al.   TRENDS IN PLANT SCIENCE

The role of WRKY transcription factors in plant abiotic stresses

(2011) Ligang Chen et al.   Biochimica et Biophysica Acta-Gene Regulatory Mechanisms

AP2/ERF family transcription factors in plant abiotic stress responses

(2011) Junya Mizoi et al.   Biochimica et Biophysica Acta-Gene Regulatory Mechanisms

RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome

(2011) Bo Li et al.   BMC BIOINFORMATICS

WRKY transcription factors: key components in abscisic acid signalling

(2011) Deena L. Rushton et al.   PLANT BIOTECHNOLOGY JOURNAL

Plant development goes like clockwork

(2010) Amaury de Montaigu et al.   TRENDS IN GENETICS

An expanding universe of circadian networks in higher plants

(2010) Jose L. Pruneda-Paz et al.   TRENDS IN PLANT SCIENCE

Differential expression analysis for sequence count data

(2010) Simon Anders et al.   GENOME BIOLOGY

DEGseq: an R package for identifying differentially expressed genes from RNA-seq data

(2009) Likun Wang et al.   BIOINFORMATICS

The Cyanobacterial Homologue of HCF136/YCF48 Is a Component of an Early Photosystem II Assembly Complex and Is Important for Both the Efficient Assembly and Repair of Photosystem II in Synechocystis sp. PCC 6803

(2008) Josef Komenda et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Applications of Metribuzin for The Control of Rigid Brome (Bromus rigidus) in No-Till Barley Crops of Southern Australia

(2008) Samuel G.L. Kleemann et al.   WEED TECHNOLOGY