Transcriptome analysis of immune- and iron-related genes after Francisella noatunensis subsp. orientalis infection in Nile tilapia (Oreochromis niloticus)

Reclassification of Francisella noatunensis subsp. orientalis Ottem et al. 2009 as Francisella orientalis sp. nov., Francisella noatunensis subsp. chilensis subsp. nov. and emended description of Francisella noatunensis

(2020) Jose Gustavo Ramirez-Paredes et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Immune Responses and Protective Efficacy of a Formalin-Killed Francisella Noatunensis Subsp. Orientalis Vaccine Evaluated through Intraperitoneal and Immersion Challenge Methods in Oreochromis Niloticus

(2020) Theeraporn Pulpipat et al.   Vaccines

Molecular characterization and pathogenicity of Francisella noatunensis subsp. orientalis isolated from cultured tilapia (Oreochromis sp.) in Taiwan

(2019) Theeraporn Pulpipat et al.   JOURNAL OF FISH DISEASES

Disentangling the immune response and host-pathogen interactions in Francisella noatunensis infected Atlantic cod

(2019) Monica Hongrø Solbakken et al.   Comparative Biochemistry and Physiology D-Genomics & Proteomics

Differential expression of immune-related genes in head kidney and spleen of cobia (Rachycentron canadum) having Streptococcus dysgalactiae infection

(2019) Shun Maekawa et al.   FISH & SHELLFISH IMMUNOLOGY

Development of a recombinase polymerase amplification assay for rapid detection of Francisella noatunensis subsp. orientalis

(2018) Khalid Shahin et al.   PLoS One

Immune-Related Functional Differential Gene Expression in Koi Carp (Cyprinus carpio) after Challenge with Aeromonas sobria

(2018) Omkar Byadgi et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Transcriptome analysis of immune response against Vibrio harveyi infection in orange-spotted grouper ( Epinephelus coioides )

(2017) Shun Maekawa et al.   FISH & SHELLFISH IMMUNOLOGY

Transcriptome analysis of the spleen of the darkbarbel catfish Pelteobagrus vachellii in response to Aeromonas hydrophila infection

(2017) Chuanjie Qin et al.   FISH & SHELLFISH IMMUNOLOGY

A Polyphasic Approach for Phenotypic and Genetic Characterization of the Fastidious Aquatic Pathogen Francisella noatunensis subsp. orientalis

(2017) José G. Ramírez-Paredes et al.   Frontiers in Microbiology

First identification of Francisella noatunensis subsp. orientalis causing mortality in Mexican tilapia Oreochromis spp.

(2016) C Ortega et al.   DISEASES OF AQUATIC ORGANISMS

Transcriptome analysis of soiny mullet (Liza haematocheila) spleen in response to Streptococcus dysgalactiae

(2016) Zhitao Qi et al.   FISH & SHELLFISH IMMUNOLOGY

FrancisellaInfection in Cultured Tilapia in Thailand and the Inflammatory Cytokine Response

(2016) Sasibha Jantrakajorn et al.   JOURNAL OF AQUATIC ANIMAL HEALTH

Francisella noatunensissubsp.orientalis, an emerging bacterial pathogen affecting cultured red tilapia (Oreochromissp.) in Thailand

(2015) Vuong Viet Nguyen et al.   AQUACULTURE RESEARCH

An outbreak of granulomatous inflammation associated with Francisella noatunensis subsp. orientalis in farmed tilapia (Oreochromis niloticus × O. aureus) in China

(2015) Qiang Lin et al.   CHINESE JOURNAL OF OCEANOLOGY AND LIMNOLOGY

Identification and functional characterization of grass carp IL-17A/F1: An evaluation of the immunoregulatory role of teleost IL-17A/F1

(2015) Linyong Du et al.   DEVELOPMENTAL AND COMPARATIVE IMMUNOLOGY

The Iron age of host-microbe interactions

(2015) M. P. Soares et al.   EMBO REPORTS

Outbreaks and genetic diversity of Francisella noatunensis subsp orientalis isolated from farm-raised Nile tilapia (Oreochromis niloticus) in Brazil

(2014) C.A.G. Leal et al.   GENETICS AND MOLECULAR RESEARCH

Pathview: an R/Bioconductor package for pathway-based data integration and visualization

(2013) Weijun Luo et al.   BIOINFORMATICS

HRG1 Is Essential for Heme Transport from the Phagolysosome of Macrophages during Erythrophagocytosis

(2013) Carine White et al.   Cell Metabolism

Francisella noatunensis subsp. noatunensis replicates within Atlantic cod (Gadus morhua L.) leucocytes and inhibits respiratory burst activity

(2013) Nils Vestvik et al.   FISH & SHELLFISH IMMUNOLOGY

Two Types of TNF-  Exist in Teleost Fish: Phylogeny, Expression, and Bioactivity Analysis of Type-II TNF- 3 in Rainbow Trout Oncorhynchus mykiss

(2013) S. Hong et al.   JOURNAL OF IMMUNOLOGY

Functional characterization of TNF-α in grass carp head kidney leukocytes: Induction and involvement in the regulation of NF-κB signaling

(2012) Anying Zhang et al.   FISH & SHELLFISH IMMUNOLOGY

Cloning and Characterization of Rainbow Trout Interleukin-17A/F2 (IL-17A/F2) and IL-17 Receptor A: Expression during Infection and Bioactivity of Recombinant IL-17A/F2

(2012) Milena M. Monte et al.   INFECTION AND IMMUNITY

Hepatic confinement of newly produced erythrocytes caused by low-temperature exposure in Xenopus laevis

(2012) S. Maekawa et al.   JOURNAL OF EXPERIMENTAL BIOLOGY

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

Differential expression analysis of multifactor RNA-Seq experiments with respect to biological variation

(2012) Davis J. McCarthy et al.   NUCLEIC ACIDS RESEARCH

RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome

(2011) Bo Li et al.   BMC BIOINFORMATICS

The complement system in teleost fish: Progress of post-homolog-hunting researches

(2011) Miki Nakao et al.   DEVELOPMENTAL AND COMPARATIVE IMMUNOLOGY

Intracellular localisation and innate immune responses following Francisella noatunensis infection of Atlantic cod (Gadus morhua) macrophages

(2011) Kathrine R. Bakkemo et al.   FISH & SHELLFISH IMMUNOLOGY

Mycobacteria-induced anaemia revisited: A molecular approach reveals the involvement of NRAMP1 and lipocalin-2, but not of hepcidin

(2011) Pedro N. Rodrigues et al.   IMMUNOBIOLOGY

Francisella infections in fish and shellfish

(2011) T H Birkbeck et al.   JOURNAL OF FISH DISEASES

Piscirickettsia-Like Organisms as a Cause of Acute Necrotic Lesions in Colombian Tilapia Larvae

(2011) Carlos A. Iregui et al.   JOURNAL OF VETERINARY DIAGNOSTIC INVESTIGATION

Francisella asiatica as the causative agent of piscine francisellosis in cultured tilapia (Oreochromis sp.) in the United States

(2011) Esteban Soto et al.   JOURNAL OF VETERINARY DIAGNOSTIC INVESTIGATION

Full-length transcriptome assembly from RNA-Seq data without a reference genome

(2011) Manfred G Grabherr et al.   NATURE BIOTECHNOLOGY

The Francisella Intracellular Life Cycle: Toward Molecular Mechanisms of Intracellular Survival and Proliferation

(2011) Audrey Chong et al.   Frontiers in Microbiology

Molecular strategies used by fish pathogens to interfere with host-programmed cell death

(2010) María P. Sepulcre et al.   DEVELOPMENTAL AND COMPARATIVE IMMUNOLOGY

An outbreak of disease caused by Francisella sp. in Nile tilapia Oreochromis niloticus at a recirculation fish farm in the UK

(2010) KR Jeffery et al.   DISEASES OF AQUATIC ORGANISMS

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

Molecular cloning of rock bream (Oplegnathus fasciatus) tumor necrosis factor-α and its effect on the respiratory burst activity of phagocytes

(2009) Min Sun Kim et al.   FISH & SHELLFISH IMMUNOLOGY

Elevation ofFrancisella philomiragiasubsp.noatunensisMikalsenet al.(2007) toFrancisella noatunensiscomb. nov. [syn.Francisella piscicidaOttemet al.(2008) syn. nov.] and characterization ofFrancisella noatunensissubsp. orientalissubsp. nov., two important fish pathogens

(2009) K.F. Ottem et al.   JOURNAL OF APPLIED MICROBIOLOGY

The Sanger FASTQ file format for sequences with quality scores, and the Solexa/Illumina FASTQ variants

(2009) Peter J. A. Cock et al.   NUCLEIC ACIDS RESEARCH