A reconsideration of inapplicable characters, and an approximation with step‐matrix recoding

Incorporating Hierarchical Characters into Phylogenetic Analysis

(2021) Melanie J Hopkins et al.   SYSTEMATIC BIOLOGY

Integration of Anatomy Ontologies and Evo-Devo Using Structured Markov Models Suggests a New Framework for Modeling Discrete Phenotypic Traits

(2019) Sergei Tarasov   SYSTEMATIC BIOLOGY

Likelihood approximations of implied weights parsimony can be selected over the Mk model by the Akaike information criterion

(2019) Pablo A. Goloboff et al.   CLADISTICS

Parsimony and model-based phylogenetic methods for morphological data: comments on O'Reilly et al .

(2018) Pablo A. Goloboff et al.   PALAEONTOLOGY

An algorithm for morphological phylogenetic analysis with inapplicable data

(2018) Martin D Brazeau et al.   SYSTEMATIC BIOLOGY

TNT version 1.5, including a full implementation of phylogenetic morphometrics

(2016) Pablo A. Goloboff et al.   CLADISTICS

RevBayes: Bayesian Phylogenetic Inference Using Graphical Models and an Interactive Model-Specification Language

(2016) Sebastian Höhna et al.   SYSTEMATIC BIOLOGY

Parsimony analysis of unaligned sequence data: maximization of homology and minimization of homoplasy, not minimization of operationally defined total cost or minimization of equally weighted transformations

(2014) Jan De Laet   CLADISTICS

Trivial minimization of extra-steps under dynamic homology

(2011) Ward C. Wheeler   CLADISTICS

Phylogenetic morphometrics (I): the use of landmark data in a phylogenetic framework

(2010) Santiago A. Catalano et al.   CLADISTICS

Phylogenetic morphometrics (II): algorithms for landmark optimization

(2010) Pablo A. Goloboff et al.   CLADISTICS

Parsimony and explanatory power

(2008) James S. Farris   CLADISTICS

TNT, a free program for phylogenetic analysis

(2008) Pablo A. Goloboff et al.   CLADISTICS

Parsimony via Consensus

(2008) Trevor C. Bruen et al.   SYSTEMATIC BIOLOGY