The truth about scats and dogs: Next-generation sequencing and spatial capture–recapture models offer opportunities for conservation monitoring of an endangered social canid

Multiple observation processes in spatial capture–recapture models: How much do we gain?

(2020) Mahdieh Tourani et al.   ECOLOGY

Applying genomic data in wildlife monitoring: Development guidelines for genotyping degraded samples with reduced single nucleotide polymorphism panels

(2020) Alina Thaden et al.   Molecular Ecology Resources

Opportunities for prioritizing and expanding conservation enterprise in India using a guild of carnivores as flagships

(2020) Arjun Srivathsa et al.   Environmental Research Letters

Every dog has its prey: Range-wide assessment of links between diet patterns, livestock depredation and human interactions for an endangered carnivore

(2020) Arjun Srivathsa et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Consequences of ignoring group association in spatial capture–recapture analysis

(2020) Richard Bischof et al.   WILDLIFE BIOLOGY

Identification errors in camera-trap studies result in systematic population overestimation

(2020) Örjan Johansson et al.   Scientific Reports

A strategic road map for conserving the Endangered dhole Cuon alpinus in India

(2020) Arjun Srivathsa et al.   MAMMAL REVIEW

More affordable and effective noninvasive single nucleotide polymorphism genotyping using high‐throughput amplicon sequencing

(2020) Charlotte E. Eriksson et al.   Molecular Ecology Resources

Spatial proximity moderates genotype uncertainty in genetic tagging studies

(2020) Ben C. Augustine et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Insights from distribution dynamics inform strategies to conserve a dhole Cuon alpinus metapopulation in India

(2019) Arjun Srivathsa et al.   Scientific Reports

Empowering conservation practice with efficient and economical genotyping from poor quality samples

(2019) Meghana Natesh et al.   Methods in Ecology and Evolution

Examining human–carnivore interactions using a socio-ecological framework: sympatric wild canids in India as a case study

(2019) Arjun Srivathsa et al.   Royal Society Open Science

Standardization and validation of a panel of cross-species microsatellites to individually identify the Asiatic wild dog (Cuon alpinus)

(2019) Shrushti Modi et al.   PeerJ

Abundance estimation from multiple data types for group-living animals: An example using dhole (Cuon alpinus)

(2019) Dusit Ngoprasert et al.   Global Ecology and Conservation

Non-invasive genetic censusing and monitoring of primate populations

(2018) Mimi Arandjelovic et al.   AMERICAN JOURNAL OF PRIMATOLOGY

Efficient single-survey estimation of carnivore density using fecal DNA and spatial capture-recapture: a bobcat case study

(2018) Dana J. Morin et al.   POPULATION ECOLOGY

Toward reliable population estimates of wolves by combining spatial capture-recapture models and non-invasive DNA monitoring

(2018) J. V. López-Bao et al.   Scientific Reports

Integrating multiple genetic detection methods to estimate population density of social and territorial carnivores

(2018) Sean M. Murphy et al.   Ecosphere

Programming With Models: Writing Statistical Algorithms for General Model Structures With NIMBLE

(2017) Perry de Valpine et al.   JOURNAL OF COMPUTATIONAL AND GRAPHICAL STATISTICS

Data integration for inference about spatial processes: A model-based approach to test and account for data inconsistency

(2017) Simone Tenan et al.   PLoS One

Spatio-temporal interactions facilitate large carnivore sympatry across a resource gradient

(2017) K. Ullas Karanth et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Assessing SNP genotyping of noninvasively collected wildlife samples using microfluidic arrays

(2017) Alina von Thaden et al.   Scientific Reports

Range contractions of the world's large carnivores

(2017) Christopher Wolf et al.   Royal Society Open Science

Categorizing species by niche characteristics can clarify conservation planning in rapidly-developing landscapes

(2016) A. Gangadharan et al.   ANIMAL CONSERVATION

A granular view of a snow leopard population using camera traps in Central China

(2016) Justine S. Alexander et al.   BIOLOGICAL CONSERVATION

Estimating population density and connectivity of American mink using spatial capture-recapture

(2016) Angela K. Fuller et al.   ECOLOGICAL APPLICATIONS

FORUM: Ecologists need robust survey designs, sampling and analytical methods

(2015) Matt W. Hayward et al.   JOURNAL OF APPLIED ECOLOGY

Estimating population sizes of leopard cats in the Western Ghats using camera surveys

(2015) Arjun Srivathsa et al.   JOURNAL OF MAMMALOGY

Individual identification from genetic marker data: developments and accuracy comparisons of methods

(2015) Jinliang Wang   Molecular Ecology Resources

A simple and effective method for obtaining mammal DNA from faeces

(2015) Ana Ramón-Laca et al.   WILDLIFE BIOLOGY

Integrating resource selection into spatial capture-recapture models for large carnivores

(2015) K. M. Proffitt et al.   Ecosphere

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

ANGSD: Analysis of Next Generation Sequencing Data

(2014) Thorfinn Sand Korneliussen et al.   BMC BIOINFORMATICS

Noninvasive sampling and genetic variability, pack structure, and dynamics in an expanding wolf population

(2014) Romolo Caniglia et al.   JOURNAL OF MAMMALOGY

Population density and abundance of sympatric large carnivores in the lowland tropical evergreen forest of Indian Eastern Himalayas

(2014) K.M. Selvan et al.   MAMMALIAN BIOLOGY

Genotyping-in-Thousands by sequencing (GT-seq): A cost effective SNP genotyping method based on custom amplicon sequencing

(2014) Nathan R. Campbell et al.   Molecular Ecology Resources

An Improved Canine Genome and a Comprehensive Catalogue of Coding Genes and Non-Coding Transcripts

(2014) Marc P. Hoeppner et al.   PLoS One

On a Dhole Trail: Examining Ecological and Anthropogenic Correlates of Dhole Habitat Occupancy in the Western Ghats of India

(2014) Arjun Srivathsa et al.   PLoS One

Status and Ecological Effects of the World's Largest Carnivores

(2014) W. J. Ripple et al.   SCIENCE

Commonalities and complementarities among approaches to conservation monitoring and evaluation

(2013) Michael B. Mascia et al.   BIOLOGICAL CONSERVATION

Counting the books while the library burns: why conservation monitoring programs need a plan for action

(2013) David B Lindenmayer et al.   FRONTIERS IN ECOLOGY AND THE ENVIRONMENT

Spatially explicit integrated population models

(2013) Richard B. Chandler et al.   Methods in Ecology and Evolution

GenAlEx 6.5: genetic analysis in Excel. Population genetic software for teaching and research--an update

(2012) R. Peakall et al.   BIOINFORMATICS

Density estimation in tiger populations: combining information for strong inference

(2012) Arjun M. Gopalaswamy et al.   ECOLOGY

Allelematch: an R package for identifying unique multilocus genotypes where genotyping error and missing data may be present

(2012) PAUL GALPERN et al.   Molecular Ecology Resources

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

Primer3—new capabilities and interfaces

(2012) Andreas Untergasser et al.   NUCLEIC ACIDS RESEARCH

Identifying Cinderella species: uncovering mammals with conservation flagship appeal

(2012) Robert J. Smith et al.   Conservation Letters

The variant call format and VCFtools

(2011) P. Danecek et al.   BIOINFORMATICS

Improving density estimates for elusive carnivores: Accounting for sex-specific detection and movements using spatial capture–recapture models for jaguars in central Brazil

(2011) Rahel Sollmann et al.   BIOLOGICAL CONSERVATION

A genome-wide perspective on the evolutionary history of enigmatic wolf-like canids

(2011) Bridgett M. vonHoldt et al.   GENOME RESEARCH

A framework for variation discovery and genotyping using next-generation DNA sequencing data

(2011) Mark A DePristo et al.   NATURE GENETICS

Importance of Accounting for Detection Heterogeneity When Estimating Abundance: the Case of French Wolves

(2010) SARAH CUBAYNES et al.   CONSERVATION BIOLOGY

Male-biased Adult Sex Ratios and their Significance for Cooperative Breeding in Dhole, Cuon alpinus, Packs

(2010) Arun B. Venkataraman   ETHOLOGY

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Bayesian inference in camera trapping studies for a class of spatial capture–recapture models

(2009) J. Andrew Royle et al.   ECOLOGY

A hierarchical model for estimating density in camera-trap studies

(2008) J. Andrew Royle et al.   JOURNAL OF APPLIED ECOLOGY

The Status of the World's Land and Marine Mammals: Diversity, Threat, and Knowledge

(2008) J. Schipper et al.   SCIENCE