Molecular Epidemiology Surveillance of SARS-CoV-2: Mutations and Genetic Diversity One Year after Emerging

COVID‐2019: The role of the nsp2 and nsp3 in its pathogenesis

(2020) Silvia Angeletti et al.   JOURNAL OF MEDICAL VIROLOGY

A new coronavirus associated with human respiratory disease in China

(2020) Fan Wu et al.   NATURE

The species Severe acute respiratory syndrome-related coronavirus: classifying 2019-nCoV and naming it SARS-CoV-2

(2020)   Nature Microbiology

DC/L‐SIGNs of Hope in the COVID‐19 Pandemic

(2020) Adam Brufsky et al.   JOURNAL OF MEDICAL VIROLOGY

Distinct Viral Clades of SARS‐CoV‐2: Implications for Modeling of Viral Spread

(2020) Adam Brufsky   JOURNAL OF MEDICAL VIROLOGY

Emerging SARS-CoV-2 mutation hot spots include a novel RNA-dependent-RNA polymerase variant

(2020) Maria Pachetti et al.   Journal of Translational Medicine

Structure of the SARS-CoV-2 spike receptor-binding domain bound to the ACE2 receptor

(2020) Jun Lan et al.   NATURE

Structure of the RNA-dependent RNA polymerase from COVID-19 virus

(2020) Yan Gao et al.   SCIENCE

Deep mutational scanning of SARS-CoV-2 receptor binding domain reveals constraints on folding and ACE2 binding

(2020) Tyler N. Starr et al.   CELL

Tracking Changes in SARS-CoV-2 Spike: Evidence that D614G Increases Infectivity of the COVID-19 Virus

(2020) Bette Korber et al.   CELL

On the evolutionary epidemiology of SARS-CoV-2

(2020) Troy Day et al.   CURRENT BIOLOGY

SARS-CoV-2 genomic variations associated with mortality rate of COVID-19

(2020) Yujiro Toyoshima et al.   JOURNAL OF HUMAN GENETICS

SARS‐CoV‐2 and SARS‐CoV: Virtual screening of potential inhibitors targeting RNA‐dependent RNA polymerase activity (NSP12)

(2020) Zijing Ruan et al.   JOURNAL OF MEDICAL VIROLOGY

The arrival and spread of SARS‐CoV‐2 in Colombia

(2020) Juan David Ramírez et al.   JOURNAL OF MEDICAL VIROLOGY

Adaptation of SARS-CoV-2 in BALB/c mice for testing vaccine efficacy

(2020) Hongjing Gu et al.   SCIENCE

Molecular Tracing of SARS-CoV-2 in Italy in the First Three Months of the Epidemic

(2020) Alessia Lai et al.   Viruses-Basel

Identification of novel mutations in RNA-dependent RNA polymerases of SARS-CoV-2 and their implications on its protein structure

(2020) Gyanendra Bahadur Chand et al.   PeerJ

Population Genetics of SARS-CoV-2: Disentangling Effects of Sampling Bias and Infection Clusters

(2020) Qi Liu et al.   GENOMICS PROTEOMICS & BIOINFORMATICS

Emergence of genomic diversity and recurrent mutations in SARS-CoV-2

(2020) Lucy van Dorp et al.   INFECTION GENETICS AND EVOLUTION

SARS-CoV-2 neutralizing antibody structures inform therapeutic strategies

(2020) Christopher O. Barnes et al.   NATURE

Spike mutation D614G alters SARS-CoV-2 fitness

(2020) Jessica A. Plante et al.   NATURE

Cryptic transmission of SARS-CoV-2 in Washington state

(2020) Trevor Bedford et al.   SCIENCE

Molecular epidemiology of the first wave of severe acute respiratory syndrome coronavirus 2 infection in Thailand in 2020

(2020) Jiratchaya Puenpa et al.   Scientific Reports

Evaluating the Effects of SARS-CoV-2 Spike Mutation D614G on Transmissibility and Pathogenicity

(2020) Erik Volz et al.   CELL

Phylogenetic analysis of SARS-CoV-2 in Boston highlights the impact of superspreading events

(2020) Jacob E. Lemieux et al.   SCIENCE

Covid-19: New coronavirus variant is identified in UK

(2020) Jacqui Wise   BMJ-British Medical Journal

A clade of SARS-CoV-2 viruses associated with lower viral loads in patient upper airways

(2020) Ramon Lorenzo-Redondo et al.   EBioMedicine

Different mutations in SARS-CoV-2 associate with severe and mild outcome

(2020) Ádám Nagy et al.   INTERNATIONAL JOURNAL OF ANTIMICROBIAL AGENTS

The Curious Case of the Nidovirus Exoribonuclease: Its Role in RNA Synthesis and Replication Fidelity

(2019) Natacha S. Ogando et al.   Frontiers in Microbiology

Complexities of Viral Mutation Rates

(2018) Kayla M. Peck et al.   JOURNAL OF VIROLOGY

Origin and evolution of pathogenic coronaviruses

(2018) Jie Cui et al.   NATURE REVIEWS MICROBIOLOGY

The evolution of Ebola virus: Insights from the 2013–2016 epidemic

(2016) Edward C. Holmes et al.   NATURE

Global circulation patterns of seasonal influenza viruses vary with antigenic drift

(2015) Trevor Bedford et al.   NATURE

One severe acute respiratory syndrome coronavirus protein complex integrates processive RNA polymerase and exonuclease activities

(2014) Lorenzo Subissi et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Detecting Natural Selection in Genomic Data

(2013) Joseph J. Vitti et al.   Annual Review of Genetics

MEGA6: Molecular Evolutionary Genetics Analysis Version 6.0

(2013) Koichiro Tamura et al.   MOLECULAR BIOLOGY AND EVOLUTION

Parallelization of the MAFFT multiple sequence alignment program

(2010) Kazutaka Katoh et al.   BIOINFORMATICS

Viral Mutation Rates

(2010) R. Sanjuan et al.   JOURNAL OF VIROLOGY

DnaSP v5: a software for comprehensive analysis of DNA polymorphism data

(2009) P. Librado et al.   BIOINFORMATICS

Jalview Version 2--a multiple sequence alignment editor and analysis workbench

(2009) A. M. Waterhouse et al.   BIOINFORMATICS