Dynamic effects of genetic variation on gene expression revealed following hypoxic stress in cardiomyocytes
出版年份 2021 全文链接
标题
Dynamic effects of genetic variation on gene expression revealed following hypoxic stress in cardiomyocytes
作者
关键词
-
出版物
eLife
Volume 10, Issue -, Pages -
出版商
eLife Sciences Publications, Ltd
发表日期
2021-02-08
DOI
10.7554/elife.57345
参考文献
相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。- Transposable elements have contributed human regulatory regions that are activated upon bacterial infection
- (2020) Lucia Bogdan et al. PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES
- Genome-wide association and Mendelian randomisation analysis provide insights into the pathogenesis of heart failure
- (2020) Sonia Shah et al. Nature Communications
- Single-cell RNA-sequencing of differentiating iPS cells reveals dynamic genetic effects on gene expression
- (2020) Anna S. E. Cuomo et al. Nature Communications
- Sex differences in gene expression in response to ischemia in the human left ventricular myocardium
- (2019) Gregory Stone et al. HUMAN MOLECULAR GENETICS
- Hypoxia induces rapid changes to histone methylation and reprograms chromatin
- (2019) Michael Batie et al. SCIENCE
- Gene activation precedes DNA demethylation in response to infection in human dendritic cells
- (2019) Alain Pacis et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- A generally conserved response to hypoxia in iPSC-derived cardiomyocytes from humans and chimpanzees
- (2019) Michelle C Ward et al. eLife
- Dynamic genetic regulation of gene expression during cellular differentiation
- (2019) B. J. Strober et al. SCIENCE
- Comparing human iPSC-cardiomyocytes versus HEK293T cells unveils disease-causing effects of Brugada mutation A735V of NaV1.5 sodium channels
- (2019) Jeanne de la Roche et al. Scientific Reports
- Interpreting Coronary Artery Disease Risk Through Gene–Environment Interactions in Gene Regulation
- (2019) Anthony S. Findley et al. GENETICS
- Human Induced Pluripotent Stem-Cell-Derived Cardiomyocytes as Models for Genetic Cardiomyopathies
- (2019) Andreas Brodehl et al. INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES
- Landscape of stimulation-responsive chromatin across diverse human immune cells
- (2019) Diego Calderon et al. NATURE GENETICS
- Allele-specific NKX2-5 binding underlies multiple genetic associations with human electrocardiographic traits
- (2019) Paola Benaglio et al. NATURE GENETICS
- TFIIIC Binding to Alu Elements Controls Gene Expression via Chromatin Looping and Histone Acetylation
- (2019) Roberto Ferrari et al. MOLECULAR CELL
- PRMT4 overexpression aggravates cardiac remodeling following myocardial infarction by promoting cardiomyocyte apoptosis
- (2019) Yilong Wang et al. BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS
- Determining the Pathogenicity of a Genomic Variant of Uncertain Significance Using CRISPR/Cas9 and Human-Induced Pluripotent Stem Cells
- (2018) Ning Ma et al. CIRCULATION
- Association of Varicose Veins With Incident Venous Thromboembolism and Peripheral Artery Disease
- (2018) Shyue-Luen Chang et al. JAMA-JOURNAL OF THE AMERICAN MEDICAL ASSOCIATION
- Shared genetic effects on chromatin and gene expression indicate a role for enhancer priming in immune response
- (2018) Kaur Alasoo et al. NATURE GENETICS
- The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2018 update
- (2018) Enis Afgan et al. NUCLEIC ACIDS RESEARCH
- Determining the genetic basis of anthracycline-cardiotoxicity by molecular response QTL mapping in induced cardiomyocytes
- (2018) David A Knowles et al. eLife
- A Comparative Assessment of Human and Chimpanzee iPSC-derived Cardiomyocytes with Primary Heart Tissues
- (2018) Bryan J. Pavlovic et al. Scientific Reports
- The Human Transcription Factors
- (2018) Samuel A. Lambert et al. CELL
- Clinical and Genetic Determinants of Varicose Veins
- (2018) Eri Fukaya et al. CIRCULATION
- The NHGRI-EBI GWAS Catalog of published genome-wide association studies, targeted arrays and summary statistics 2019
- (2018) Annalisa Buniello et al. NUCLEIC ACIDS RESEARCH
- Transposable elements are regulated by context-specific patterns of chromatin marks in mouse embryonic stem cells
- (2018) Jiangping He et al. Nature Communications
- Impact of regulatory variation across human iPSCs and differentiated cells
- (2017) Nicholas E. Banovich et al. GENOME RESEARCH
- Systematic Evaluation of Pleiotropy Identifies 6 Further Loci Associated With Coronary Artery Disease
- (2017) Thomas R. Webb et al. JOURNAL OF THE AMERICAN COLLEGE OF CARDIOLOGY
- Genetic effects on gene expression across human tissues
- (2017) François Aguet et al. NATURE
- The Encyclopedia of DNA elements (ENCODE): data portal update
- (2017) Carrie A Davis et al. NUCLEIC ACIDS RESEARCH
- A complete tool set for molecular QTL discovery and analysis
- (2017) Olivier Delaneau et al. Nature Communications
- Genetic regulatory effects modified by immune activation contribute to autoimmune disease associations
- (2017) Sarah Kim-Hellmuth et al. Nature Communications
- Deciphering the genetic control of gene expression following Mycobacterium leprae antigen stimulation
- (2017) Jérémy Manry et al. PLoS Genetics
- iPSCORE: A Resource of 222 iPSC Lines Enabling Functional Characterization of Genetic Variation across a Variety of Cell Types
- (2017) Athanasia D. Panopoulos et al. Stem Cell Reports
- Maintenance of redox homeostasis by hypoxia-inducible factors
- (2017) Debangshu Samanta et al. Redox Biology
- False discovery rates: a new deal
- (2016) Matthew Stephens BIOSTATISTICS
- Genetic Ancestry and Natural Selection Drive Population Differences in Immune Responses to Pathogens
- (2016) Yohann Nédélec et al. CELL
- Capture‐C reveals preformed chromatin interactions between HIF‐binding sites and distant promoters
- (2016) James L Platt et al. EMBO REPORTS
- Integrative approaches for large-scale transcriptome-wide association studies
- (2016) Alexander Gusev et al. NATURE GENETICS
- Human induced pluripotent stem cell–derived cardiomyocytes recapitulate the predilection of breast cancer patients to doxorubicin-induced cardiotoxicity
- (2016) Paul W Burridge et al. NATURE MEDICINE
- Coding Variation in ANGPTL4, LPL, and SVEP1 and the Risk of Coronary Disease
- (2016) NEW ENGLAND JOURNAL OF MEDICINE
- Mapping Variation in Cellular and Transcriptional Response to 1,25-Dihydroxyvitamin D3 in Peripheral Blood Mononuclear Cells
- (2016) Silvia N. Kariuki et al. PLoS One
- Chromatin variation associated with liver metabolism is mediated by transposable elements
- (2016) Juan Du et al. Epigenetics & Chromatin
- Predicting gene targets from integrative analyses of summary data from GWAS and eQTL studies for 28 human complex traits
- (2016) Jennifer M. Whitehead Pavlides et al. Genome Medicine
- Survey of the Heritability and Sparse Architecture of Gene Expression Traits across Human Tissues
- (2016) Heather E. Wheeler et al. PLoS Genetics
- Fast and efficient QTL mapper for thousands of molecular phenotypes
- (2015) Halit Ongen et al. BIOINFORMATICS
- LDlink: a web-based application for exploring population-specific haplotype structure and linking correlated alleles of possible functional variants: Fig. 1.
- (2015) Mitchell J. Machiela et al. BIOINFORMATICS
- Revisiting Cardiac Cellular CompositionNovelty and Significance
- (2015) Alexander R. Pinto et al. CIRCULATION RESEARCH
- Bacterial infection remodels the DNA methylation landscape of human dendritic cells
- (2015) Alain Pacis et al. GENOME RESEARCH
- A comprehensive 1000 Genomes–based genome-wide association meta-analysis of coronary artery disease
- (2015) Majid Nikpay et al. NATURE GENETICS
- WASP: allele-specific software for robust molecular quantitative trait locus discovery
- (2015) Bryce van de Geijn et al. NATURE METHODS
- A genome-wide analysis of the response to inhaled β2-agonists in chronic obstructive pulmonary disease
- (2015) M Hardin et al. PHARMACOGENOMICS JOURNAL
- Host Genetic Variation Influences Gene Expression Response to Rhinovirus Infection
- (2015) Minal Çalışkan et al. PLoS Genetics
- Joint analysis of differential gene expression in multiple studies using correlation motifs
- (2014) Y. Wei et al. BIOSTATISTICS
- Regulation of Ischemic Neuronal Death by E2F4-p130 Protein Complexes
- (2014) Grace O. Iyirhiaro et al. JOURNAL OF BIOLOGICAL CHEMISTRY
- Normalization of RNA-seq data using factor analysis of control genes or samples
- (2014) Davide Risso et al. NATURE BIOTECHNOLOGY
- Genome-Wide Identification of Expression Quantitative Trait Loci (eQTLs) in Human Heart
- (2014) Tamara T. Koopmann et al. PLoS One
- voom: precision weights unlock linear model analysis tools for RNA-seq read counts
- (2014) Charity W Law et al. GENOME BIOLOGY
- featureCounts: an efficient general purpose program for assigning sequence reads to genomic features
- (2013) Y. Liao et al. BIOINFORMATICS
- Characterizing the genetic basis of transcriptome diversity through RNA-sequencing of 922 individuals
- (2013) A. Battle et al. GENOME RESEARCH
- Gene expression and genetic variation in human atria
- (2013) Honghuang Lin et al. HEART RHYTHM
- Hypoxia-induced epigenetic modifications are associated with cardiac tissue fibrosis and the development of a myofibroblast-like phenotype
- (2013) Chris J. Watson et al. HUMAN MOLECULAR GENETICS
- Transposition of native chromatin for fast and sensitive epigenomic profiling of open chromatin, DNA-binding proteins and nucleosome position
- (2013) Jason D Buenrostro et al. NATURE METHODS
- The Subread aligner: fast, accurate and scalable read mapping by seed-and-vote
- (2013) Yang Liao et al. NUCLEIC ACIDS RESEARCH
- Long-Lasting Changes in DNA Methylation Following Short-Term Hypoxic Exposure in Primary Hippocampal Neuronal Cultures
- (2013) Iain Hartley et al. PLoS One
- Anti-apoptotic function of the E2F transcription factor 4 (E2F4)/p130, a member of retinoblastoma gene family in cardiac myocytes
- (2012) Dharmendra Dingar et al. JOURNAL OF MOLECULAR AND CELLULAR CARDIOLOGY
- Fast gapped-read alignment with Bowtie 2
- (2012) Ben Langmead et al. NATURE METHODS
- Deciphering the genetic architecture of variation in the immune response to Mycobacterium tuberculosis infection
- (2012) L. B. Barreiro et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Hypoxia-induced DNA hypermethylation in human pulmonary fibroblasts is associated with Thy-1 promoter methylation and the development of a pro-fibrotic phenotype
- (2012) Claire M Robinson et al. RESPIRATORY RESEARCH
- MEME-ChIP: motif analysis of large DNA datasets
- (2011) Philip Machanick et al. BIOINFORMATICS
- High-resolution genome-wide mapping of HIF-binding sites by ChIP-seq
- (2011) J. Schodel et al. BLOOD
- Genetic variation in radiation-induced cell death
- (2011) D. A. Smirnov et al. GENOME RESEARCH
- Why is the partial oxygen pressure of human tissues a crucial parameter? Small molecules and hypoxia
- (2011) Aude Carreau et al. JOURNAL OF CELLULAR AND MOLECULAR MEDICINE
- Large-scale association analysis identifies 13 new susceptibility loci for coronary artery disease
- (2011) Heribert Schunkert et al. NATURE GENETICS
- Wide-ranging functions of E2F4 in transcriptional activation and repression revealed by genome-wide analysis
- (2011) Bum-Kyu Lee et al. NUCLEIC ACIDS RESEARCH
- Hypoxia-induced transcriptional repression of the melanoma-associated oncogene MITF
- (2011) E. Feige et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Interactions between Glucocorticoid Treatment and Cis-Regulatory Polymorphisms Contribute to Cellular Response Phenotypes
- (2011) Joseph C. Maranville et al. PLoS Genetics
- Large-Scale Gene-Centric Analysis Identifies Novel Variants for Coronary Artery Disease
- (2011) PLoS Genetics
- Gene Expression and Genetic Variation in Response to Endoplasmic Reticulum Stress in Human Cells
- (2010) Beth A. Dombroski et al. AMERICAN JOURNAL OF HUMAN GENETICS
- BEDTools: a flexible suite of utilities for comparing genomic features
- (2010) Aaron R. Quinlan et al. BIOINFORMATICS
- Transcriptomic analysis of patients with tetralogy of Fallot reveals the effect of chronic hypoxia on myocardial gene expression
- (2010) Mohamed T. Ghorbel et al. JOURNAL OF THORACIC AND CARDIOVASCULAR SURGERY
- Understanding mechanisms underlying human gene expression variation with RNA sequencing
- (2010) Joseph K. Pickrell et al. NATURE
- edgeR: a Bioconductor package for differential expression analysis of digital gene expression data
- (2009) M. D. Robinson et al. BIOINFORMATICS
- A Unifying Model for the Selective Regulation of Inducible Transcription by CpG Islands and Nucleosome Remodeling
- (2009) Vladimir R. Ramirez-Carrozzi et al. CELL
- Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources
- (2009) Da Wei Huang et al. Nature Protocols
- MEME SUITE: tools for motif discovery and searching
- (2009) T. L. Bailey et al. NUCLEIC ACIDS RESEARCH
- lumi: a pipeline for processing Illumina microarray
- (2008) P. Du et al. BIOINFORMATICS
- Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists
- (2008) Da Wei Huang et al. NUCLEIC ACIDS RESEARCH
- Model-based Analysis of ChIP-Seq (MACS)
- (2008) Yong Zhang et al. GENOME BIOLOGY
Find the ideal target journal for your manuscript
Explore over 38,000 international journals covering a vast array of academic fields.
SearchAdd your recorded webinar
Do you already have a recorded webinar? Grow your audience and get more views by easily listing your recording on Peeref.
Upload Now