Molecular parallelisms between pigmentation in the avian iris and the integument of ectothermic vertebrates

The identification of genes involved in the evolution of color patterns in fish

(2019) Uwe Irion et al.   CURRENT OPINION IN GENETICS & DEVELOPMENT

Graph-based genome alignment and genotyping with HISAT2 and HISAT-genotype

(2019) Daehwan Kim et al.   NATURE BIOTECHNOLOGY

Dynamic eye colour as an honest signal of aggression

(2018) Robert J.P. Heathcote et al.   CURRENT BIOLOGY

Distinct interactions of Sox5 and Sox10 in fate specification of pigment cells in medaka and zebrafish

(2018) Yusuke Nagao et al.   PLoS Genetics

A One-Penny Imputed Genome from Next-Generation Reference Panels

(2018) Brian L. Browning et al.   AMERICAN JOURNAL OF HUMAN GENETICS

ggsashimi: Sashimi plot revised for browser- and annotation-independent splicing visualization

(2018) Diego Garrido-Martín et al.   PLoS Computational Biology

The evolution of iris colour in relation to nocturnality in owls

(2018) A. Passarotto et al.   JOURNAL OF AVIAN BIOLOGY

A systems biology approach uncovers the core gene regulatory network governing iridophore fate choice from the neural crest

(2018) Kleio Petratou et al.   PLoS Genetics

Intraspecific eye color variability in birds and mammals: a recent evolutionary event exclusive to humans and domestic animals

(2017) Juan J. Negro et al.   Frontiers in Zoology

Salmon provides fast and bias-aware quantification of transcript expression

(2017) Rob Patro et al.   NATURE METHODS

The biology of color

(2017) Innes C. Cuthill et al.   SCIENCE

Neural crest derivatives in ocular development: Discerning the eye of the storm

(2015) Antionette L. Williams et al.   BIRTH DEFECTS RESEARCH PART C-EMBRYO TODAY-REVIEWS

A cost-effective RNA sequencing protocol for large-scale gene expression studies

(2015) Zhonggang Hou et al.   Scientific Reports

Rcorrector: efficient and accurate error correction for Illumina RNA-seq reads

(2015) Li Song et al.   GigaScience

Salient eyes deter conspecific nest intruders in wild jackdaws (Corvus monedula)

(2014) G. L. Davidson et al.   Biology Letters

ANGSD: Analysis of Next Generation Sequencing Data

(2014) Thorfinn Sand Korneliussen et al.   BMC BIOINFORMATICS

Leucophores are similar to xanthophores in their specification and differentiation processes in medaka

(2014) T. Kimura et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Pigment cell interactions and differential xanthophore recruitment underlying zebrafish stripe reiteration and Danio pattern evolution

(2014) Larissa B. Patterson et al.   Nature Communications

The SLC2 (GLUT) family of membrane transporters

(2013) Mike Mueckler et al.   MOLECULAR ASPECTS OF MEDICINE

Genomic Diversity and Evolution of the Head Crest in the Rock Pigeon

(2013) M. D. Shapiro et al.   SCIENCE

A program for annotating and predicting the effects of single nucleotide polymorphisms, SnpEff

(2012) Pablo Cingolani et al.   FLY

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

(2012) Christian Quast et al.   NUCLEIC ACIDS RESEARCH

The variant call format and VCFtools

(2011) P. Danecek et al.   BIOINFORMATICS

Full-length transcriptome assembly from RNA-Seq data without a reference genome

(2011) Manfred G Grabherr et al.   NATURE BIOTECHNOLOGY

Sequential actions of Pax3 and Pax7 drive xanthophore development in zebrafish neural crest

(2008) James E.N. Minchin et al.   DEVELOPMENTAL BIOLOGY

Analyzing real-time PCR data by the comparative CT method

(2008) Thomas D Schmittgen et al.   Nature Protocols

Iris development in vertebrates; genetic and molecular considerations

(2007) Noa Davis-Silberman et al.   BRAIN RESEARCH