Diet-induced changes of redox potential underlie compositional shifts in the rumen archaeal community

Microbiome-metabolome analysis reveals unhealthy alterations in the composition and metabolism of ruminal microbiota with increasing dietary grain in a goat model

(2015) Sheng-Yong Mao et al.   ENVIRONMENTAL MICROBIOLOGY

Rumen microbial community composition varies with diet and host, but a core microbiome is found across a wide geographical range

(2015) Gemma Henderson et al.   Scientific Reports

Exploring the bovine rumen bacterial community from birth to adulthood

(2013) Elie Jami et al.   ISME Journal

Diet rapidly and reproducibly alters the human gut microbiome

(2013) Lawrence A. David et al.   NATURE

Methanogenic Population and CH4Production in Swedish Dairy Cows Fed Different Levels of Forage

(2012) R. Danielsson et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Ultra-high-throughput microbial community analysis on the Illumina HiSeq and MiSeq platforms

(2012) J Gregory Caporaso et al.   ISME Journal

The Bovine Ruminal Fluid Metabolome

(2012) Fozia Saleem et al.   Metabolomics

Diversity, stability and resilience of the human gut microbiota

(2012) Catherine A. Lozupone et al.   NATURE

The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

(2012) Christian Quast et al.   NUCLEIC ACIDS RESEARCH

Relationship between rumen methanogens and methane production in dairy cows fed diets supplemented with a feed enzyme additive

(2011) M. Zhou et al.   JOURNAL OF APPLIED MICROBIOLOGY

Barcoded Pyrosequencing Reveals That Consumption of Galactooligosaccharides Results in a Highly Specific Bifidogenic Response in Humans

(2011) Lauren M. G. Davis et al.   PLoS One

Predicting a Human Gut Microbiota's Response to Diet in Gnotobiotic Mice

(2011) J. J. Faith et al.   SCIENCE

Diet Drives Convergence in Gut Microbiome Functions Across Mammalian Phylogeny and Within Humans

(2011) B. D. Muegge et al.   SCIENCE

Dominant and diet-responsive groups of bacteria within the human colonic microbiota

(2010) Alan W Walker et al.   ISME Journal

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

Effects of duodenal redox status on calcium absorption and related genes expression in high-fat diet–fed mice

(2010) Ying Xiao et al.   NUTRITION

Effects of feeding sorghum-sudan, alfalfa hay and fresh alfalfa with concentrate on intake, first compartment stomach characteristics, digestibility, nitrogen balance and energy metabolism in alpacas (Lama pacos) at low altitude

(2009) Q. Liu et al.   Livestock Science

The RAST Server: Rapid Annotations using Subsystems Technology

(2008) Ramy K Aziz et al.   BMC GENOMICS

Oxidative stress in rats fed a high-fat high-sucrose diet and preventive effect of polyphenols: Involvement of mitochondrial and NAD(P)H oxidase systems

(2008) C. Feillet-Coudray et al.   FREE RADICAL BIOLOGY AND MEDICINE

Velvet: Algorithms for de novo short read assembly using de Bruijn graphs

(2008) D. R. Zerbino et al.   GENOME RESEARCH

Evolution of Mammals and Their Gut Microbes

(2008) R. E. Ley et al.   SCIENCE