Machine learning analysis using 77,044 genomic and transcriptomic profiles to accurately predict tumor type

Pan-cancer analysis of whole genomes

(2020)   NATURE

A deep learning system accurately classifies primary and metastatic cancers using passenger mutation patterns

(2020) Wei Jiao et al.   Nature Communications

Artificial intelligence in digital pathology — new tools for diagnosis and precision oncology

(2019) Kaustav Bera et al.   Nature Reviews Clinical Oncology

Development of Genome-Derived Tumor Type Prediction to Inform Clinical Cancer Care

(2019) Alexander Penson et al.   JAMA Oncology

Oncogenic Signaling Pathways in The Cancer Genome Atlas

(2018) Francisco Sanchez-Vega et al.   CELL

Renal Cell Carcinoma Presenting as Carcinoma of Unknown Primary Site: Recognition of a Treatable Patient Subset

(2018) F. Anthony Greco et al.   Clinical Genitourinary Cancer

Review of diagnostic error in anatomical pathology and the role and value of second opinions in error prevention

(2018) Martyn Peck et al.   JOURNAL OF CLINICAL PATHOLOGY

Salmon provides fast and bias-aware quantification of transcript expression

(2017) Rob Patro et al.   NATURE METHODS

Epigenetic profiling to classify cancer of unknown primary: a multicentre, retrospective analysis

(2016) Sebastian Moran et al.   LANCET ONCOLOGY

Genetics and Molecular Pathogenesis of Gastric Adenocarcinoma

(2015) Patrick Tan et al.   GASTROENTEROLOGY

Comprehensive Genomic Profiling of Carcinoma of Unknown Primary Site

(2015) Jeffrey S. Ross et al.   JAMA Oncology

Cancer of Unknown Primary Site

(2014) Gauri R. Varadhachary et al.   NEW ENGLAND JOURNAL OF MEDICINE

The Somatic Genomic Landscape of Glioblastoma

(2013) Cameron W. Brennan et al.   CELL

STAR: ultrafast universal RNA-seq aligner

(2012) Alexander Dobin et al.   BIOINFORMATICS

Molecular Gene Expression Profiling to Predict the Tissue of Origin and Direct Site-Specific Therapy in Patients With Carcinoma of Unknown Primary Site: A Prospective Trial of the Sarah Cannon Research Institute

(2012) John D. Hainsworth et al.   JOURNAL OF CLINICAL ONCOLOGY

Comprehensive molecular portraits of human breast tumours

(2012) Daniel C. Koboldt et al.   NATURE

Identification of tissue of origin in body fluid specimens using a gene expression microarray assay

(2011) Gregory A. Stancel et al.   CANCER CYTOPATHOLOGY

Performance and Clinical Evaluation of the 92-Gene Real-Time PCR Assay for Tumor Classification

(2011) Mark G. Erlander et al.   JOURNAL OF MOLECULAR DIAGNOSTICS

Carcinomas of an unknown primary origin—diagnosis and treatment

(2011) Christophe Massard et al.   Nature Reviews Clinical Oncology

Mutation ofFOXL2in Granulosa-Cell Tumors of the Ovary

(2009) Sohrab P. Shah et al.   NEW ENGLAND JOURNAL OF MEDICINE

Determining Tissue of Origin for Metastatic Cancers

(2009) Glenda G. Anderson et al.   APPLIED IMMUNOHISTOCHEMISTRY & MOLECULAR MORPHOLOGY

Inflammatory Cytokines Induce Phosphorylation and Ubiquitination of Prostate Suppressor Protein NKX3.1

(2008) M. C. Markowski et al.   CANCER RESEARCH