Organic amendments drive shifts in microbial community structure and keystone taxa which increase C mineralization across aggregate size classes

DNA stable-isotope probing delineates carbon flows from rice residues into soil microbial communities depending on fertilization

(2020) Yali Kong et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Fungal Community Structural and Microbial Functional Pattern Changes After Soil Amendments by Oilseed Meals of Jatropha curcas and Camelina sativa: A Microcosm Study

(2019) Ping Hu et al.   Frontiers in Microbiology

Long-term manure application increases soil organic matter and aggregation, and alters microbial community structure and keystone taxa

(2019) Yongxin Lin et al.   SOIL BIOLOGY & BIOCHEMISTRY

Organic amendments shift the phosphorus-correlated microbial co-occurrence pattern in the peanut rhizosphere network during long-term fertilization regimes

(2018) Yan Chen et al.   APPLIED SOIL ECOLOGY

Keystone taxa as drivers of microbiome structure and functioning

(2018) Samiran Banerjee et al.   NATURE REVIEWS MICROBIOLOGY

Nematodes and microbial community affect the sizes and turnover rates of organic carbon pools in soil aggregates

(2018) Yuji Jiang et al.   SOIL BIOLOGY & BIOCHEMISTRY

Isolation and characterization of phosphofungi, and screening of their plant growth-promoting activities

(2018) Xiaohui Wang et al.   AMB Express

Long-term application of manure over plant residues mitigates acidification, builds soil organic carbon and shifts prokaryotic diversity in acidic Ultisols

(2018) Guiping Ye et al.   APPLIED SOIL ECOLOGY

Bacterial contributions to delignification and lignocellulose degradation in forest soils with metagenomic and quantitative stable isotope probing

(2018) Roland C. Wilhelm et al.   ISME Journal

Soil aggregation and associated microbial communities modify the impact of agricultural management on carbon content

(2017) Pankaj Trivedi et al.   ENVIRONMENTAL MICROBIOLOGY

Nematode grazing promotes bacterial community dynamics in soil at the aggregate level

(2017) Yuji Jiang et al.   ISME Journal

Fungal community reveals less dispersal limitation and potentially more connected network than that of bacteria in bamboo forest soils

(2017) Xian Xiao et al.   MOLECULAR ECOLOGY

Soil networks become more connected and take up more carbon as nature restoration progresses

(2017) Elly Morriën et al.   Nature Communications

Opportunities and challenges in biological lignin valorization

(2016) Gregg T Beckham et al.   CURRENT OPINION IN BIOTECHNOLOGY

Fungal community composition in soils subjected to long-term chemical fertilization is most influenced by the type of organic matter

(2016) Ruibo Sun et al.   ENVIRONMENTAL MICROBIOLOGY

Aggregate size and glucose level affect priming sources: A three-source-partitioning study

(2016) Jing Tian et al.   SOIL BIOLOGY & BIOCHEMISTRY

Effect of mineral sediments on carbon mineralization, organic matter composition and microbial community dynamics in a mountain peatland

(2016) Xiaoyue Wang et al.   SOIL BIOLOGY & BIOCHEMISTRY

Network analysis reveals functional redundancy and keystone taxa amongst bacterial and fungal communities during organic matter decomposition in an arable soil

(2016) Samiran Banerjee et al.   SOIL BIOLOGY & BIOCHEMISTRY

Aggregate size and their disruption affect 14C-labeled glucose mineralization and priming effect

(2015) Jing Tian et al.   APPLIED SOIL ECOLOGY

Determinants of bacterial communities in Canadian agroforestry systems

(2015) Samiran Banerjee et al.   ENVIRONMENTAL MICROBIOLOGY

Assessing the contributions of sesquioxides and soil organic matter to aggregation in an Ultisol under long-term fertilization

(2015) X. Peng et al.   SOIL & TILLAGE RESEARCH

Pathways of litter C by formation of aggregates and SOM density fractions: Implications from 13C natural abundance

(2014) Anna Gunina et al.   SOIL BIOLOGY & BIOCHEMISTRY

Deciphering microbial interactions and detecting keystone species with co-occurrence networks

(2014) David Berry et al.   Frontiers in Microbiology

Soil organic carbon mineralization rates in aggregates under contrasting land uses

(2013) S.M. Fazle Rabbi et al.   GEODERMA

Towards a unified paradigm for sequence-based identification of fungi

(2013) Urmas Kõljalg et al.   MOLECULAR ECOLOGY

Soil aggregate stratification of nematodes and microbial communities affects the metabolic quotient in an acid soil

(2013) Yuji Jiang et al.   SOIL BIOLOGY & BIOCHEMISTRY

The Microbial Efficiency-Matrix Stabilization (MEMS) framework integrates plant litter decomposition with soil organic matter stabilization: do labile plant inputs form stable soil organic matter?

(2012) M. Francesca Cotrufo et al.   GLOBAL CHANGE BIOLOGY

Microbial interactions: from networks to models

(2012) Karoline Faust et al.   NATURE REVIEWS MICROBIOLOGY

Microbial Co-occurrence Relationships in the Human Microbiome

(2012) Karoline Faust et al.   PLoS Computational Biology

Microbial control over carbon cycling in soil

(2012) Joshua P. Schimel et al.   Frontiers in Microbiology

The Inter-Valley Soil Comparative Survey: the ecology of Dry Valley edaphic microbial communities

(2011) Charles K Lee et al.   ISME Journal

Illumina-based analysis of microbial community diversity

(2011) Patrick H Degnan et al.   ISME Journal

Metabolic trade-offs and the maintenance of the fittest and the flattest

(2011) Robert E. Beardmore et al.   NATURE

Bacterial community assembly based on functional genes rather than species

(2011) C. Burke et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The distribution of nematodes and soil microbial communities across soil aggregate fractions and farm management systems

(2011) Shabeg S. Briar et al.   SOIL BIOLOGY & BIOCHEMISTRY

Biodegradation pathways of chloroanilines by Acinetobacter baylyi strain GFJ2

(2010) Parnuch Hongsawat et al.   JOURNAL OF HAZARDOUS MATERIALS

Bacteria with dual resistance to elevated concentrations of heavy metals and antibiotics in Nigerian contaminated systems

(2009) Ganiyu O. Oyetibo et al.   ENVIRONMENTAL MONITORING AND ASSESSMENT

Microbial community structure and its functional implications

(2009) Jed A. Fuhrman   NATURE

Searching for unifying principles in soil ecology

(2009) Noah Fierer et al.   SOIL BIOLOGY & BIOCHEMISTRY

Small-scale heterogeneity in carbon dioxide, nitrous oxide and methane production from aggregates of a cultivated sandy-loam soil

(2008) Benjamin K. Sey et al.   SOIL BIOLOGY & BIOCHEMISTRY