4.8 Article

A hierarchy of protein patterns robustly decodes cell shape information

期刊

NATURE PHYSICS
卷 17, 期 5, 页码 578-+

出版社

NATURE RESEARCH
DOI: 10.1038/s41567-021-01164-9

关键词

-

资金

  1. National Science Foundation CAREER award
  2. German Research Foundation (Deutsche Forschungsgemeinschaft, DFG) fellowship within the Graduate School of Quantitative Biosciences Munich
  3. Joachim Herz Foundation
  4. DFG [SFB 1032, GRK 2062]
  5. National Science Foundation [NSF PHY-1748958]

向作者/读者索取更多资源

The article discusses a shape-adaptation mechanism that controls membrane protein dynamics robustly despite cell shape deformations. It explores how cell shape information is decoded to control the activity of the enzyme Rho, and proposes that this mechanism may constitute a general principle for cell shape sensing and control.
Many cellular processes, such as cell division(1-3), cell motility(4), wound healing(5) and tissue folding(6,7), rely on the precise positioning of proteins on the membrane. Such protein patterns emerge from a combination of protein interactions, transport, conformational state changes and chemical reactions at the molecular level(8). Recent experimental and theoretical work clearly demonstrates the role of geometry, including membrane curvature(9-11) and local cytosolic-to-membrane ratios(12,13), and advective cortical flow in modulating membrane protein patterns. However, it remains unclear how these proteins achieve robust spatiotemporal organization on the membrane during the dynamic cell shape changes involved in physiological processes. Here we use oocytes of the starfish Patiria miniata as a model system to elucidate a shape-adaptation mechanism that robustly controls spatiotemporal protein dynamics on the membrane in spite of cell shape deformations. By combining experiments with biophysical theory, we show how cell shape information contained in a cytosolic gradient can be decoded by a bistable regulator of the enzyme Rho, which is associated with contractility. This bistable front in turn controls a mechanochemical response by locally triggering excitable dynamics of Rho. We posit that such a shape-adaptation mechanism based on a hierarchy of protein patterns may constitute a general physical principle for cell shape sensing and control.

作者

我是这篇论文的作者
点击您的名字以认领此论文并将其添加到您的个人资料中。

评论

主要评分

4.8
评分不足

次要评分

新颖性
-
重要性
-
科学严谨性
-
评价这篇论文

推荐

Article Developmental Biology

A conserved node in the regulation of Vasa between an induced and an inherited program of primordial germ cell specification

Margherita Perillo, S. Zachary Swartz, Gary M. Wessel

Summary: A conserved post-translational mechanism of germ cell specification is identified in two echinoderm species. This mechanism involves the degradation of Vasa protein in future somatic cells by the E3-ubiquitin-ligase Gustavus. Despite the divergence in germ cell specification mechanisms between these species, the regulation of Vasa by Gustavus is conserved. This study suggests an ancestral and evolutionarily transposable role of Gustavus-mediated Vasa regulation in primordial germ cell formation.

DEVELOPMENTAL BIOLOGY (2022)

Article Physics, Multidisciplinary

Subdiffusive Activity Spreading in the Diffusive Epidemic Process

Borislav Polovnikov, Patrick Wilke, Erwin Frey

Summary: This study reveals two different processes in the diffusive epidemic process, namely the subdiffusive propagation of infection clusters and the diffusive fluctuations in the healthy population. It sheds new light on the theoretical classification of the system.

PHYSICAL REVIEW LETTERS (2022)

Article Multidisciplinary Sciences

The time complexity of self-assembly

Florian M. Gartner, Isabella R. Graf, Erwin Frey

Summary: The time complexity of nonequilibrium self-assembly processes is characterized and different assembly scenarios are identified with distinct degrees of complexity. Optimal control strategies are determined. An efficient irreversible scheme for artificial self-assembly of nanostructures is proposed.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2022)

Article Multidisciplinary Sciences

Bridging scales in a multiscale pattern-forming system

Laeschki Wurthner, Fridtjof Brauns, Grzegorz Pawlik, Jacob Halatek, Jacob Kerssemakers, Cees Dekker, Erwin Frey

Summary: Self-organized pattern formation is crucial in biological processes. This study introduces a semi-phenomenological approach based on mass conservation, allowing the reconstruction of pattern information from large-scale dynamics. The approach is demonstrated using the Min system, which produces multiscale patterns in a spatially heterogeneous geometry.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2022)

Article Chemistry, Physical

Polarity and chirality control of an active fluid by passive nematic defects

Alfredo Sciortino, Lukas J. Neumann, Timo Krueger, Ivan Maryshev, Tetsuhiko F. Teshima, Bernhard Wolfrum, Erwin Frey, Andreas R. Bausch

Summary: This study demonstrates the use of passive nematic materials to control the pattern formation process of active fluids by introducing and controlling defects. It shows that defects in the passive material can guide the flow of active microtubules and lead to the formation of macroscopic polar patterns, opening up new possibilities for shaping active materials using passive defects.

NATURE MATERIALS (2023)

Article Multidisciplinary Sciences

Directing Min protein patterns with advective bulk flow

Sabrina Meindlhumer, Fridtjof Brauns, Jernej Rudi Finzgar, Jacob Kerssemakers, Cees Dekker, Erwin Frey

Summary: Meindlhumer et al. have conducted a combined theoretical and experimental study on how the propagation direction of Min protein patterns can be changed by a bulk flow of solution. They demonstrate that the direction of in vitro Min protein patterns can be controlled by hydrodynamic flow, with downstream propagation for low concentration ratios of MinE:MinD, upstream propagation for large ratios, and multistability in between. Their study reveals the potential of using flow to probe molecular features and constrain mathematical models for pattern formation systems.

NATURE COMMUNICATIONS (2023)

Article Nanoscience & Nanotechnology

Inferring scale-dependent non-equilibrium activity using carbon nanotubes

Alexandru Bacanu, James F. Pelletier, Yoon Jung, Nikta Fakhri

Summary: In living systems, molecular interactions form multiscale structures that mediate processes in a close relationship between structure and function. However, their dynamics remain poorly characterized due to a lack of methods to quantify non-equilibrium activity. By measuring time-reversal asymmetry encoded in conformational dynamics of carbon nanotubes, we characterize the multiscale dynamics of non-equilibrium activity and relate it to physical parameters. Our analysis provides a general tool to characterize non-equilibrium activity in high-dimensional spaces.

NATURE NANOTECHNOLOGY (2023)

Article Physics, Multidisciplinary

Mechanochemical feedback loop drives persistent motion of liposomes

Meifang Fu, Tom Burkart, Ivan Maryshev, Henri G. Franquelim, Adrian Merino-Salomon, Maria Reverte-Lopez, Erwin Frey, Petra Schwille

Summary: Through a mechanochemical feedback loop involving Min proteins of Escherichia coli, liposomes start to move, which may help to design motile artificial cells.

NATURE PHYSICS (2023)

Article Physics, Multidisciplinary

Enzyme-Enriched Condensates Show Self-Propulsion, Positioning, and Coexistence

Leonardo Demarchi, Andriy Goychuk, Ivan Maryshev, Erwin Frey

Summary: Enzyme-enriched condensates can regulate the distribution of their substrates and induce enzyme fluxes through feedback interactions. Weak feedback leads to condensate movement towards the center of a confined domain, while above a threshold, self-propulsion and oscillatory dynamics occur. Enzyme-driven fluxes can also result in interrupted coarsening and condensate division, leading to equidistant positioning.

PHYSICAL REVIEW LETTERS (2023)

Article Multidisciplinary Sciences

Patterning of morphogenetic anisotropy fields

Zihang Wang, M. Cristina Marchetti, Fridtjof Brauns

Summary: Orientational order, encoded in anisotropic fields, is important in organism development. The study focuses on the freshwater polyp Hydra and its muscle fiber orientation defects. A minimal model is introduced to study the interaction between muscle fiber orientation, morphogen gradients, and body shape. The model successfully reproduces experimentally observed reorganization of orientational order on curved surfaces mimicking Hydra's morphologies.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2023)

Article Mechanics

Dissipative timescales from coarse-graining irreversibility

Freddy A. Cisneros, Nikta Fakhri, Jordan M. Horowitz

Summary: We propose and investigate a method for identifying timescales of dissipation in nonequilibrium steady states modeled as discrete-state Markov jump processes. The method is based on how the irreversibility, measured by the statistical breaking of time-reversal symmetry, varies under temporal coarse-graining. We observe a sigmoidal-like shape of the irreversibility as a function of the coarse-graining time, which allows us to develop a method for estimating the dissipative time scale from time-series data.

JOURNAL OF STATISTICAL MECHANICS-THEORY AND EXPERIMENT (2023)

Article Physics, Fluids & Plasmas

Geometry-induced patterns through mechanochemical coupling

Laeschkir Wuerthner, Andriy Goychuk, Erwin Frey

Summary: Intracellular protein patterns play a crucial role in regulating important cellular processes and their dynamics are influenced by changes in cell shape. To understand the underlying mechanisms, a conceptual model for cell polarity on a dynamic one-dimensional manifold is explored. The dynamics of the membrane shape induce pattern-forming instabilities and can also suppress pattern formation and shift existing patterns.

PHYSICAL REVIEW E (2023)

Article Chemistry, Physical

Hierarchical defect-induced condensation in active nematics

Timo Krueger, Ivan Maryshev, Erwin Frey

Summary: Topological defects play a central role in the formation and organization of various biological systems. In this paper, agent-based simulations are used to study phase-separated active nematics and the formation of -1/2 defects. The authors investigate the morphology and characteristics of these defects, as well as observe and characterize lateral arc-like structures separating from nematic bands. The study also introduces a hydrodynamic theory that explains the emergence of defects and arcs.

SOFT MATTER (2023)

Article Physics, Fluids & Plasmas

Periodic temporal environmental variations induce coexistence in resource competition models

Tom Burkart, Jan Willeke, Erwin Frey

Summary: This article investigates how periodic temporal environmental variation can affect the composition and biodiversity of an ecosystem. By using a population dynamics model and timescale separation, the study shows that the impact of environmental changes on species coexistence and stability depends on the timescale of the changes.

PHYSICAL REVIEW E (2023)

Review Physics, Applied

Control of protein-based pattern formation via guiding cues

Tom Burkart, Manon C. Wigbers, Laeschkir Wurthner, Erwin Frey

Summary: Proteins play a crucial role in controlling various vital functions in living cells. Understanding the formation of protein patterns inside cells is essential for comprehending information processing in biological systems.

NATURE REVIEWS PHYSICS (2022)

暂无数据