InterMetalDB: A Database and Browser of Intermolecular Metal Binding Sites in Macromolecules with Structural Information

atomium—a Python structure parser

(2020) Sam M Ireland et al.   BIOINFORMATICS

A rod conformation of the Pyrococcus furiosus Rad50 coiled coil

(2020) Young‐Min Soh et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Galvanization of Protein–Protein Interactions in a Dynamic Zinc Interactome

(2020) Anna Kocyła et al.   TRENDS IN BIOCHEMICAL SCIENCES

MMseqs2 desktop and local web server app for fast, interactive sequence searches

(2019) M Mirdita et al.   BIOINFORMATICS

ZincBind—the database of zinc binding sites

(2019) Sam M Ireland et al.   Database-The Journal of Biological Databases and Curation

Metal Exchange in the Interprotein Zn II ‐Binding Site of the Rad50 Hook Domain: Structural Insights into Cd II ‐Induced DNA‐Repair Inhibition

(2019) Michał Padjasek et al.   CHEMISTRY-A EUROPEAN JOURNAL

NGL viewer: web-based molecular graphics for large complexes

(2018) Alexander S Rose et al.   BIOINFORMATICS

The human iron-proteome

(2018) Claudia Andreini et al.   Metallomics

OUP accepted manuscript

(2018)   NUCLEIC ACIDS RESEARCH

MetalPDB in 2018: a database of metal sites in biological macromolecular structures

(2017) Valeria Putignano et al.   NUCLEIC ACIDS RESEARCH

Metal-coupled folding as the driving force for the extreme stability of Rad50 zinc hook dimer assembly

(2016) Tomasz Kochańczyk et al.   Scientific Reports

Metal Cations in G-Quadruplex Folding and Stability

(2016) Debmalya Bhattacharyya et al.   Frontiers in Chemistry

Relationship between the architecture of zinc coordination and zinc binding affinity in proteins – insights into zinc regulation

(2015) Tomasz Kochańczyk et al.   Metallomics

Metals in Protein–Protein Interfaces

(2014) Woon Ju Song et al.   Annual Review of Biophysics

Interfacial metal coordination in engineered protein and peptide assemblies

(2014) Pamela A Sontz et al.   CURRENT OPINION IN CHEMICAL BIOLOGY

Crystal structure of a DNA/Ba2+ G-quadruplex containing a water-mediated C-tetrad

(2014) Diana Zhang et al.   NUCLEIC ACIDS RESEARCH

Zinc Coordination Spheres in Protein Structures

(2013) Mikko Laitaoja et al.   INORGANIC CHEMISTRY

Metal–ligand interactions: An analysis of zinc binding groups using the Protein Data Bank

(2012) Kentaro Kawai et al.   EUROPEAN JOURNAL OF MEDICINAL CHEMISTRY

Femtomolar Zn2+ affinity of LIM domain of PDLIM1 protein uncovers crucial contribution of protein–protein interactions to protein stability

(2012) Małgorzata Sikorska et al.   JOURNAL OF INORGANIC BIOCHEMISTRY

MetalPDB: a database of metal sites in biological macromolecular structures

(2012) Claudia Andreini et al.   NUCLEIC ACIDS RESEARCH

Minimal Functional Sites Allow a Classification of Zinc Sites in Proteins

(2011) Claudia Andreini et al.   PLoS One

dbTEU: a protein database of trace element utilization

(2010) Yan Zhang et al.   BIOINFORMATICS

X-ray Crystal Structure of the Rotavirus Inner Capsid Particle at 3.8 Å Resolution

(2010) Brian McClain et al.   JOURNAL OF MOLECULAR BIOLOGY

ZifBASE: a database of zinc finger proteins and associated resources

(2009) Mannu Jayakanthan et al.   BMC GENOMICS

Metalloproteins and metal sensing

(2009) Kevin J. Waldron et al.   NATURE

Metals in proteins: correlation between the metal-ion type, coordination number and the amino-acid residues involved in the coordination

(2008) Ivan Dokmanić et al.   ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY

MESPEUS: a database of the geometry of metal sites in proteins

(2008) K. Hsin et al.   JOURNAL OF APPLIED CRYSTALLOGRAPHY

Metal ions in biological catalysis: from enzyme databases to general principles

(2008) Claudia Andreini et al.   JOURNAL OF BIOLOGICAL INORGANIC CHEMISTRY

Data mining of metal ion environments present in protein structures

(2008) Heping Zheng et al.   JOURNAL OF INORGANIC BIOCHEMISTRY