In Silico Investigation of the New UK (B.1.1.7) and South African (501Y.V2) SARS-CoV-2 Variants with a Focus at the ACE2–Spike RBD Interface

SPServer: split-statistical potentials for the analysis of protein structures and protein–protein interactions

(2021) Joaquim Aguirre-Plans et al.   BMC BIOINFORMATICS

Informatics for Chemistry, Biology, and Biomedical Sciences

(2021) Edgar López-López et al.   Journal of Chemical Information and Modeling

Structural basis for the recognition of the SARS-CoV-2 by full-length human ACE2

(2020) Renhong Yan et al.   SCIENCE

Cryo-EM structure of the 2019-nCoV spike in the prefusion conformation

(2020) Daniel Wrapp et al.   SCIENCE

Genomic characterization of the 2019 novel human-pathogenic coronavirus isolated from a patient with atypical pneumonia after visiting Wuhan

(2020) Jasper Fuk-Woo Chan et al.   Emerging Microbes & Infections

Functional assessment of cell entry and receptor usage for SARS-CoV-2 and other lineage B betacoronaviruses

(2020) Michael Letko et al.   Nature Microbiology

Analysis of protein missense alterations by combining sequence‐ and structure‐based methods

(2020) Aram Gyulkhandanyan et al.   Molecular Genetics & Genomic Medicine

Virtual screening web servers: designing chemical probes and drug candidates in the cyberspace

(2020) Natesh Singh et al.   BRIEFINGS IN BIOINFORMATICS

Structural and Functional Basis of SARS-CoV-2 Entry by Using Human ACE2

(2020) Qihui Wang et al.   CELL

Structure, Function, and Antigenicity of the SARS-CoV-2 Spike Glycoprotein

(2020) Alexandra C. Walls et al.   CELL

SARS-CoV-2 Cell Entry Depends on ACE2 and TMPRSS2 and Is Blocked by a Clinically Proven Protease Inhibitor

(2020) Markus Hoffmann et al.   CELL

Structure of the SARS-CoV-2 spike receptor-binding domain bound to the ACE2 receptor

(2020) Jun Lan et al.   NATURE

Cell entry mechanisms of SARS-CoV-2

(2020) Jian Shang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Renin-angiotensin system at the heart of COVID-19 pandemic

(2020) Marco Alifano et al.   BIOCHIMIE

Deep mutational scanning of SARS-CoV-2 receptor binding domain reveals constraints on folding and ACE2 binding

(2020) Tyler N. Starr et al.   CELL

Tracking Changes in SARS-CoV-2 Spike: Evidence that D614G Increases Infectivity of the COVID-19 Virus

(2020) Bette Korber et al.   CELL

Genomic determinants of pathogenicity in SARS-CoV-2 and other human coronaviruses

(2020) Ayal B. Gussow et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Investigation of the genetic variation in ACE2 on the structural recognition by the novel coronavirus (SARS-CoV-2)

(2020) Xingyi Guo et al.   Journal of Translational Medicine

DynaMut2 : Assessing changes in stability and flexibility upon single and multiple point missense mutations

(2020) Carlos H.M. Rodrigues et al.   PROTEIN SCIENCE

UCSF ChimeraX : Structure visualization for researchers, educators, and developers

(2020) Eric F. Pettersen et al.   PROTEIN SCIENCE

Evolutionary and structural analyses of SARS-CoV-2 D614G spike protein mutation now documented worldwide

(2020) Sandra Isabel et al.   Scientific Reports

Molecular docking simulation reveals ACE2 polymorphisms that may increase the affinity of ACE2 with the SARS-CoV-2 Spike protein

(2020) Matteo Calcagnile et al.   BIOCHIMIE

Complete Mapping of Mutations to the SARS-CoV-2 Spike Receptor-Binding Domain that Escape Antibody Recognition

(2020) Allison J. Greaney et al.   Cell Host & Microbe

Can Predicted Protein 3D Structures Provide Reliable Insights into whether Missense Variants Are Disease Associated?

(2019) Sirawit Ittisoponpisan et al.   JOURNAL OF MOLECULAR BIOLOGY

pyDockEneRes: per-residue decomposition of protein–protein docking energy

(2019) Miguel Romero-Durana et al.   BIOINFORMATICS

SKEMPI 2.0: An updated benchmark of changes in protein-protein binding energy, kinetics and thermodynamics upon mutation

(2018) Justina Jankauskaitė et al.   BIOINFORMATICS

CABS-flex 2.0: a web server for fast simulations of flexibility of protein structures

(2018) Aleksander Kuriata et al.   NUCLEIC ACIDS RESEARCH

CABS-flex standalone: a simulation environment for fast modeling of protein flexibility

(2018) Mateusz Kurcinski et al.   BIOINFORMATICS

Why are RNA virus mutation rates so damn high?

(2018) Siobain Duffy   PLOS BIOLOGY

Ebola Virus Glycoprotein with Increased Infectivity Dominated the 2013–2016 Epidemic

(2016) William E. Diehl et al.   CELL

Structural and physico-chemical effects of disease and non-disease nsSNPs on proteins

(2015) Tugba G Kucukkal et al.   CURRENT OPINION IN STRUCTURAL BIOLOGY

DUET: a server for predicting effects of mutations on protein stability using an integrated computational approach

(2014) D. E. V. Pires et al.   NUCLEIC ACIDS RESEARCH

The Effects of Non-Synonymous Single Nucleotide Polymorphisms (nsSNPs) on Protein–Protein Interactions

(2013) Christopher M. Yates et al.   JOURNAL OF MOLECULAR BIOLOGY

Airborne Transmission of Influenza A/H5N1 Virus Between Ferrets

(2012) S. Herfst et al.   SCIENCE

COCOMAPS: a web application to analyze and visualize contacts at the interface of biomolecular complexes

(2011) A. Vangone et al.   BIOINFORMATICS

Quasispecies Theory and the Behavior of RNA Viruses

(2010) Adam S. Lauring et al.   PLoS Pathogens

Pathogenic or not? And if so, then how? Studying the effects of missense mutations using bioinformatics methods

(2009) Janita Thusberg et al.   HUMAN MUTATION