Genome-Wide Identification and Expression Analysis of OsbZIP09 Target Genes in Rice Reveal Its Mechanism of Controlling Seed Germination

TaABI5, a wheat homolog of Arabidopsis thaliana ABA insensitive 5, controls seed germination

(2020) Shigeko Utsugi et al.   JOURNAL OF PLANT RESEARCH

QTL mapping for pre-harvest sprouting resistance in japonica rice varieties utilizing genome re-sequencing

(2020) Kyeong-Seong Cheon et al.   MOLECULAR GENETICS AND GENOMICS

ABI5 modulates seed germination via feedback regulation of the expression of the PYR/PYL/RCAR ABA receptor genes

(2020) Hongyun Zhao et al.   NEW PHYTOLOGIST

OsMFT2 is involved in the regulation of ABA signaling‐mediated seed germination through interacting with OsbZIP23/66/72 in rice

(2020) Song Song et al.   PLANT JOURNAL

Gibberellin recovers seed germination in rice with impaired brassinosteroid signalling

(2020) Qian-Feng Li et al.   PLANT SCIENCE

The role of light in regulating seed dormancy and germination

(2020) Liwen Yang et al.   Journal of Integrative Plant Biology

Abscisic acid promotes jasmonic acid biosynthesis via a ‘SAPK10‐bZIP72‐ AOC ’ pathway to synergistically inhibit seed germination in rice ( Oryza sativa )

(2020) Yifeng Wang et al.   NEW PHYTOLOGIST

Barley ABI5 (Abscisic Acid INSENSITIVE 5) Is Involved in Abscisic Acid-Dependent Drought Response

(2020) Anna Collin et al.   Frontiers in Plant Science

OsDOG1L-3 regulates seed dormancy through the abscisic acid pathway in rice

(2020) Qian Wang et al.   PLANT SCIENCE

Transcription Factors Rc and OsVP1 Coordinately Regulate Preharvest Sprouting Tolerance in Red Pericarp Rice

(2020) Jing Wang et al.   JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY

Clonal seeds from hybrid rice by simultaneous genome engineering of meiosis and fertilization genes

(2019) Chun Wang et al.   NATURE BIOTECHNOLOGY

JAZ proteins modulate seed germination through interaction with ABI 5 in bread wheat and Arabidopsis

(2019) Lan Ju et al.   NEW PHYTOLOGIST

Overexpression of OsLea14-A improves the tolerance of rice and increases Hg accumulation under diverse stresses

(2019) Tingzhang Hu et al.   ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH

Linking phenylpropanoid metabolism, lignin deposition, and plant growth inhibition

(2019) Fabiola Muro-Villanueva et al.   CURRENT OPINION IN BIOTECHNOLOGY

B‐box protein BBX 19 suppresses seed germination via induction of ABI 5

(2019) Mengjuan Bai et al.   PLANT JOURNAL

The EMBL-EBI search and sequence analysis tools APIs in 2019

(2019) Fábio Madeira et al.   NUCLEIC ACIDS RESEARCH

Control of rice pre‐harvest sprouting by glutaredoxin‐mediated abscisic acid signaling

(2019) Fan Xu et al.   PLANT JOURNAL

The grain yield modulator miR156 regulates seed dormancy through the gibberellin pathway in rice

(2019) Chunbo Miao et al.   Nature Communications

Abscisic acid dynamics, signaling, and functions in plants

(2019) Kong Chen et al.   Journal of Integrative Plant Biology

The ascorbate peroxidase APX1 is a direct target of a zinc finger transcription factor ZFP36 and a late embryogenesis abundant protein OsLEA5 interacts with ZFP36 to co-regulate OsAPX1 in seed germination in rice

(2018) Liping Huang et al.   BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS

The Arabidopsis bZIP transcription factor family — an update

(2018) Wolfgang Dröge-Laser et al.   CURRENT OPINION IN PLANT BIOLOGY

SWISS-MODEL: homology modelling of protein structures and complexes

(2018) Andrew Waterhouse et al.   NUCLEIC ACIDS RESEARCH

An Atypical Late Embryogenesis Abundant Protein OsLEA5 Plays a Positive Role in ABA-Induced Antioxidant Defense in Oryza sativa L.

(2018) Liping Huang et al.   PLANT AND CELL PHYSIOLOGY

The AWPM-19 Family Protein OsPM1 Mediates Abscisic Acid Influx and Drought Response in Rice

(2018) Lingya Yao et al.   PLANT CELL

Endosperm sugar accumulation caused by mutation of PHS8 /ISA1 leads to pre-harvest sprouting in rice

(2018) Lin Du et al.   PLANT JOURNAL

Seed germination and dormancy - the classic story, new puzzles, and evolution

(2018) Hiroyuki Nonogaki   Journal of Integrative Plant Biology

Identification and characterization of the rice pre-harvest sprouting mutants involved in molybdenum cofactor biosynthesis

(2018) Xin Liu et al.   NEW PHYTOLOGIST

SMALL ORGAN SIZE 1 and SMALL ORGAN SIZE 2/DWARF AND LOW-TILLERING Form a Complex to Integrate Auxin and Brassinosteroid Signaling in Rice

(2017) Ko Hirano et al.   Molecular Plant

Mapping genome-wide transcription-factor binding sites using DAP-seq

(2017) Anna Bartlett et al.   Nature Protocols

Arabidopsis ABI5 plays a role in regulating ROS homeostasis by activating CATALASE 1 transcription in seed germination

(2017) Chao Bi et al.   PLANT MOLECULAR BIOLOGY

New Genetic Loci Associated with Preharvest Sprouting and Its Evaluation Based on the Model Equation in Rice

(2017) Gi-An Lee et al.   Frontiers in Plant Science

Multifunctional Roles of Plant Dehydrins in Response to Environmental Stresses

(2017) Yang Liu et al.   Frontiers in Plant Science

Genome-Wide Identification and Structural Analysis of bZIP Transcription Factor Genes in Brassica napus

(2017) Yan Zhou et al.   Genes

Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape

(2016) Ronan C. O’Malley et al.   CELL

BZR1 Interacts with HY5 to Mediate Brassinosteroid- and Light-Regulated Cotyledon Opening in Arabidopsis in Darkness

(2016) Qian-Feng Li et al.   Molecular Plant

Two Faces of One Seed: Hormonal Regulation of Dormancy and Germination

(2016) Kai Shu et al.   Molecular Plant

The pivotal role of abscisic acid signaling during transition from seed maturation to germination

(2016) An Yan et al.   PLANT CELL REPORTS

The Arabidopsis KS-type dehydrin recovers lactate dehydrogenase activity inhibited by copper with the contribution of His residues

(2016) Masakazu Hara et al.   PLANT SCIENCE

Dissection of brassinosteroid-regulated proteins in rice embryos during germination by quantitative proteomics

(2016) Qian-Feng Li et al.   Scientific Reports

Genome-wide evolutionary characterization and analysis of bZIP transcription factors and their expression profiles in response to multiple abiotic stresses in Brachypodium distachyon

(2015) Xiang Liu et al.   BMC GENOMICS

Characterization of OsPM19L1 encoding an AWPM-19-like family protein that is dramatically induced by osmotic stress in rice

(2015) H. Chen et al.   GENETICS AND MOLECULAR RESEARCH

Dormancy and germination: How does the crop seed decide?

(2015) K. Shu et al.   PLANT BIOLOGY

Marker-assisted breeding of a LOX-3-null rice line with improved storability and resistance to preharvest sprouting

(2015) Yasuhiro Suzuki et al.   THEORETICAL AND APPLIED GENETICS

The K-segments of wheat dehydrin WZY2 are essential for its protective functions under temperature stress

(2015) Wenbo Yang et al.   Frontiers in Plant Science

Transcriptomic analysis of wheat near-isogenic lines identifies PM19-A1 and A2 as candidates for a major dormancy QTL

(2015) Jose M. Barrero et al.   GENOME BIOLOGY

Amplification of ABA biosynthesis and signaling through a positive feedback mechanism in seeds

(2014) Mariko Nonogaki et al.   PLANT JOURNAL

Identification and phylogenetic analysis of late embryogenesis abundant proteins family in tomato (Solanum lycopersicum)

(2014) Jun Cao et al.   PLANTA

OsLOX2, a rice type I lipoxygenase, confers opposite effects on seed germination and longevity

(2014) Jiexue Huang et al.   TRANSGENIC RESEARCH

In vitro binding of Sorghum bicolor transcription factors ABI4 and ABI5 to a conserved region of a GA 2-OXIDASE promoter: possible role of this interaction in the expression of seed dormancy

(2013) Renata Cantoro et al.   JOURNAL OF EXPERIMENTAL BOTANY

A rice lectin receptor-like kinase that is involved in innate immune responses also contributes to seed germination

(2013) Xiaoyan Cheng et al.   PLANT JOURNAL

Genetic and Physiological Characterization of Two Clusters of Quantitative Trait Loci Associated With Seed Dormancy and Plant Height in Rice

(2013) Heng Ye et al.   G3-Genes Genomes Genetics

TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions

(2013) Daehwan Kim et al.   GENOME BIOLOGY

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

DWARF AND LOW-TILLERING Acts as a Direct Downstream Target of a GSK3/SHAGGY-Like Kinase to Mediate Brassinosteroid Responses in Rice

(2012) Hongning Tong et al.   PLANT CELL

Structure and function of abscisic acid receptors

(2012) Takuya Miyakawa et al.   TRENDS IN PLANT SCIENCE

MEME-ChIP: motif analysis of large DNA datasets

(2011) Philip Machanick et al.   BIOINFORMATICS

Induction of 9-cis-epoxycarotenoid dioxygenase in Arabidopsis thaliana seeds enhances seed dormancy

(2011) C. Martinez-Andujar et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The ABRE-binding bZIP transcription factor OsABF2 is a positive regulator of abiotic stress and ABA signaling in rice

(2010) Md. Amir Hossain et al.   JOURNAL OF PLANT PHYSIOLOGY

PLASTOCHRON3/GOLIATHencodes a glutamate carboxypeptidase required for proper development in rice

(2009) Taiji Kawakatsu et al.   PLANT JOURNAL

Molecular Aspects of Seed Dormancy

(2008) Ruth Finkelstein et al.   Annual Review of Plant Biology

QTL analysis for resistance to preharvest sprouting in rice (Oryza sativa)

(2008) F. Y. Gao et al.   PLANT BREEDING

Mutations of genes in synthesis of the carotenoid precursors of ABA lead to pre-harvest sprouting and photo-oxidation in rice

(2008) Jun Fang et al.   PLANT JOURNAL

A bZIP transcription factor, OsABI5, is involved in rice fertility and stress tolerance

(2008) Meijuan Zou et al.   PLANT MOLECULAR BIOLOGY

Soybean GmbZIP44, GmbZIP62 and GmbZIP78 genes function as negative regulator of ABA signaling and confer salt and freezing tolerance in transgenic Arabidopsis

(2008) Yong Liao et al.   PLANTA

The Role of bZIP Transcription Factors in Green Plant Evolution: Adaptive Features Emerging from Four Founder Genes

(2008) Luiz Gustavo Guedes Corrêa et al.   PLoS One

Model-based Analysis of ChIP-Seq (MACS)

(2008) Yong Zhang et al.   GENOME BIOLOGY