Early transmission of SARS-CoV-2 in South Africa: An epidemiological and phylogenetic report

Genome Detective Coronavirus Typing Tool for rapid identification and characterization of novel coronavirus genomes

(2020) Sara Cleemput et al.   BIOINFORMATICS

Evolutionary history, potential intermediate animal host, and cross‐species analyses of SARS‐CoV‐2

(2020) Xingguang Li et al.   JOURNAL OF MEDICAL VIROLOGY

An interactive web-based dashboard to track COVID-19 in real time

(2020) Ensheng Dong et al.   LANCET INFECTIOUS DISEASES

Incubation Period and Other Epidemiological Characteristics of 2019 Novel Coronavirus Infections with Right Truncation: A Statistical Analysis of Publicly Available Case Data

(2020) Natalie M. Linton et al.   Journal of Clinical Medicine

Early dynamics of transmission and control of COVID-19: a mathematical modelling study

(2020) Adam J Kucharski et al.   LANCET INFECTIOUS DISEASES

The proximal origin of SARS-CoV-2

(2020) Kristian G. Andersen et al.   NATURE MEDICINE

Nigeria responds to COVID-19; first case detected in sub-Saharan Africa

(2020) Paul Adepoju   NATURE MEDICINE

Nextstrain: real-time tracking of pathogen evolution

(2018) James Hadfield et al.   BIOINFORMATICS

Renewing Felsenstein’s phylogenetic bootstrap in the era of big data

(2018) F. Lemoine et al.   NATURE

Genome Detective: An Automated System for Virus Identification from High-throughput sequencing data

(2018) Michael Vilsker et al.   BIOINFORMATICS

Reconstruction and prediction of viral disease epidemics

(2018) M. U. G. Kraemer et al.   EPIDEMIOLOGY AND INFECTION

Tracking virus outbreaks in the twenty-first century

(2018) Nathan D. Grubaugh et al.   Nature Microbiology

GISAID: Global initiative on sharing all influenza data – from vision to reality

(2017) Yuelong Shu et al.   Eurosurveillance

IQ-TREE: A Fast and Effective Stochastic Algorithm for Estimating Maximum-Likelihood Phylogenies

(2014) Lam-Tung Nguyen et al.   MOLECULAR BIOLOGY AND EVOLUTION