Not Frozen in the Ice: Large and Dynamic Rearrangements in the Mitochondrial Genomes of the Antarctic Fish

Multiple independent chromosomal fusions accompanied the radiation of the Antarctic teleost genus Trematomus (Notothenioidei:Nototheniidae)

(2020) Juliette Auvinet et al.   BMC EVOLUTIONARY BIOLOGY

qMGR: A new approach for quantifying mitochondrial genome rearrangement

(2020) Jifeng Zhang et al.   MITOCHONDRION

The genomic basis for colonizing the freezing Southern Ocean revealed by Antarctic toothfish and Patagonia robalo genomes

(2019) Liangbiao Chen et al.   GigaScience

Characterization of the mitochondrial genome of an ancient amphipod Halice sp. MT-2017 (Pardaliscidae) from 10,908 m in the Mariana Trench

(2019) Jun-yuan Li et al.   Scientific Reports

Historical contingency shapes adaptive radiation in Antarctic fishes

(2019) Jacob M. Daane et al.   Nature Ecology & Evolution

Mechanisms of gene rearrangement in 13 bothids based on comparison with a newly completed mitogenome of the threespot flounder, Grammatobothus polyophthalmus (Pleuronectiformes: Bothidae)

(2019) Hairong Luo et al.   BMC GENOMICS

Characterization of complete mitochondrial genome of Pogonophryne albipinna (Perciformes: Artedidraconidae)

(2019) Nazia Tabassum et al.   Mitochondrial DNA Part B-Resources

Combinatorics of Tandem Duplication Random Loss Mutations on Circular Genomes

(2018) Tom Hartmann et al.   IEEE-ACM Transactions on Computational Biology and Bioinformatics

Datamonkey 2.0: A Modern Web Application for Characterizing Selective and Other Evolutionary Processes

(2018) Steven Weaver et al.   MOLECULAR BIOLOGY AND EVOLUTION

Phylogenetic analysis of Antarctic notothenioids illuminates the utility of RADseq for resolving Cenozoic adaptive radiations

(2018) Thomas J. Near et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

An inverse latitudinal gradient in speciation rate for marine fishes

(2018) Daniel L. Rabosky et al.   NATURE

DnaSP 6: DNA Sequence Polymorphism Analysis of Large Data Sets

(2017) Julio Rozas et al.   MOLECULAR BIOLOGY AND EVOLUTION

UFBoot2: Improving the Ultrafast Bootstrap Approximation

(2017) Diep Thi Hoang et al.   MOLECULAR BIOLOGY AND EVOLUTION

Bathymetric distributions of notothenioid fishes

(2017) Joseph T. Eastman   POLAR BIOLOGY

Complete mitochondrial genome sequence of Patagonian blenny, Eleginops maclovinus (Perciformes: Eleginopidae) with phylogenetic consideration

(2017) Manuel Lee-Estevez et al.   Conservation Genetics Resources

Cradles and museums of Antarctic teleost biodiversity

(2017) Alex Dornburg et al.   Nature Ecology & Evolution

The highly rearranged mitochondrial genomes of the crabs Maja crispata and Maja squinado (Majidae) and gene order evolution in Brachyura

(2017) Andrea Basso et al.   Scientific Reports

Intraspecific rearrangement of mitochondrial genome suggests the prevalence of the tandem duplication-random loss (TDLR) mechanism in Quasipaa boulengeri

(2016) Yun Xia et al.   BMC GENOMICS

Structure and variation of the mitochondrial genome of fishes

(2016) Takashi P. Satoh et al.   BMC GENOMICS

Back to Water: Signature of Adaptive Evolution in Cetacean Mitochondrial tRNAs

(2016) Stefano Montelli et al.   PLoS One

Terrace Aware Data Structure for Phylogenomic Inference from Supermatrices

(2016) Olga Chernomor et al.   SYSTEMATIC BIOLOGY

Neofunctionalization of zona pellucida proteins enhances freeze-prevention in the eggs of Antarctic notothenioids

(2016) Lixue Cao et al.   Nature Communications

The complete mitochondrial genome of Chionodraco hamatus (Notothenioidei: Channichthyidae) with phylogenetic consideration

(2016) Wei Song et al.   Mitochondrial DNA Part B-Resources

Animal ice-binding (antifreeze) proteins and glycolipids: an overview with emphasis on physiological function

(2015) J. G. Duman   JOURNAL OF EXPERIMENTAL BIOLOGY

Less Is More: An Adaptive Branch-Site Random Effects Model for Efficient Detection of Episodic Diversifying Selection

(2015) Martin D. Smith et al.   MOLECULAR BIOLOGY AND EVOLUTION

Concerted Evolution of Duplicate Control Regions in the Mitochondria of Species of the Flatfish Family Bothidae (Teleostei: Pleuronectiformes)

(2015) Dong-He Li et al.   PLoS One

AliGROOVE – visualization of heterogeneous sequence divergence within multiple sequence alignments and detection of inflated branch support

(2014) Patrick Kück et al.   BMC BIOINFORMATICS

The evolution of mitochondrial genomes in modern frogs (Neobatrachia): nonadaptive evolution of mitochondrial genome reorganization

(2014) Yun Xia et al.   BMC GENOMICS

A novel model of double replications and random loss accounts for rearrangements in the Mitogenome of Samariscus latus (Teleostei: Pleuronectiformes)

(2014) Wei Shi et al.   BMC GENOMICS

Is It an Ant or a Butterfly? Convergent Evolution in the Mitochondrial Gene Order of Hymenoptera and Lepidoptera

(2014) Massimiliano Babbucci et al.   Genome Biology and Evolution

Complete mitochondrial genome of the Antarctic silverfish,Pleuragramma antarcticum(Perciformes, Nototheniidae)

(2014) Jungeun Lee et al.   Mitochondrial DNA

Complete mitochondrial genome of the Antarctic icefish,Chaenocephalus aceratus(Perciforms, Channichthyidae)

(2014) Jungeun Lee et al.   Mitochondrial DNA

Complete mitochondrial genome of the Antarctic bullhead notothen,Notothenia coriiceps(Perciformes, Nototheniidae)

(2014) Jae Soon Oh et al.   Mitochondrial DNA

RELAX: Detecting Relaxed Selection in a Phylogenetic Framework

(2014) Joel O. Wertheim et al.   MOLECULAR BIOLOGY AND EVOLUTION

IQ-TREE: A Fast and Effective Stochastic Algorithm for Estimating Maximum-Likelihood Phylogenies

(2014) Lam-Tung Nguyen et al.   MOLECULAR BIOLOGY AND EVOLUTION

The Inversion of the Control Region in Three Mitogenomes Provides Further Evidence for an Asymmetric Model of Vertebrate mtDNA Replication

(2014) Miguel M. Fonseca et al.   PLoS One

Insect Mitochondrial Genomics: Implications for Evolution and Phylogeny

(2013) Stephen L. Cameron   Annual Review of Entomology

Complete mitogenome sequences of four flatfishes (Pleuronectiformes) reveal a novel gene arrangement of L-strand coding genes

(2013) Wei Shi et al.   BMC EVOLUTIONARY BIOLOGY

Mitogenomic sequences and evidence from unique gene rearrangements corroborate evolutionary relationships of myctophiformes (Neoteleostei)

(2013) Jan Y Poulsen et al.   BMC EVOLUTIONARY BIOLOGY

Afrobatrachian mitochondrial genomes: genome reorganization, gene rearrangement mechanisms, and evolutionary trends of duplicated and rearranged genes

(2013) Atsushi Kurabayashi et al.   BMC GENOMICS

Control region translocation and a tRNA gene inversion in the mitogenome ofParaplagusia japonica(Pleuronectiformes: Cynoglossidae)

(2013) Li Gong et al.   Mitochondrial DNA

Reconstructing mitochondrial genomes directly from genomic next-generation sequencing reads—a baiting and iterative mapping approach

(2013) Christoph Hahn et al.   NUCLEIC ACIDS RESEARCH

The origin of modern frogs (Neobatrachia) was accompanied by acceleration in mitochondrial and nuclear substitution rates

(2012) Iker Irisarri et al.   BMC GENOMICS

Genome Evolution in the Cold: Antarctic Icefish Muscle Transcriptome Reveals Selective Duplications Increasing Mitochondrial Function

(2012) Alessandro Coppe et al.   Genome Biology and Evolution

The Mitochondrial Genome of Paraminabea aldersladei (Cnidaria: Anthozoa: Octocorallia) Supports Intramolecular Recombination as the Primary Mechanism of Gene Rearrangement in Octocoral Mitochondrial Genomes

(2012) Stephanie A. Brockman et al.   Genome Biology and Evolution

Tracking the elusive monophyly of nototheniid fishes (Teleostei) with multiple mitochondrial and nuclear markers

(2012) A. Dettai et al.   Marine Genomics

Genetic aspects of mitochondrial genome evolution

(2012) Matthias Bernt et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Mitochondrial Function in Antarctic Nototheniids with ND6 Translocation

(2012) Felix C. Mark et al.   PLoS One

Ancient climate change, antifreeze, and the evolutionary diversification of Antarctic fishes

(2012) T. J. Near et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The complete mitochondrial genome of the mackerel icefish, Champsocephalus gunnari (Actinopterygii: Channichthyidae), with reference to the evolution of mitochondrial genomes in Antarctic notothenioids

(2012) CHU-YIN LIN et al.   ZOOLOGICAL JOURNAL OF THE LINNEAN SOCIETY

A method for computing an inventory of metazoan mitochondrial gene order rearrangements

(2011) Matthias Bernt et al.   BMC BIOINFORMATICS

NONADAPTIVE EVOLUTION OF MITOCHONDRIAL GENOME SIZE

(2011) Bastien Boussau et al.   EVOLUTION

Improved systematic tRNA gene annotation allows new insights into the evolution of mitochondrial tRNA structures and into the mechanisms of mitochondrial genome rearrangements

(2011) Frank Jühling et al.   NUCLEIC ACIDS RESEARCH

Evaluating the Roles of Energetic Functional Constraints on Teleost Mitochondrial-Encoded Protein Evolution

(2010) Yan-Bo Sun et al.   MOLECULAR BIOLOGY AND EVOLUTION

ND6 Gene "Lost" and Found: Evolution of Mitochondrial Gene Rearrangement in Antarctic Notothenioids

(2010) X. Zhuang et al.   MOLECULAR BIOLOGY AND EVOLUTION

A novel rearrangement in the mitochondrial genome of tongue sole, Cynoglossus semilaevis: control region translocation and a tRNA gene inversion

(2009) Xiaoyu Kong et al.   GENOME

CAIcal: A combined set of tools to assess codon usage adaptation

(2008) Pere Puigbò et al.   Biology Direct

The complete mitochondrial genome of the bag-shelter moth Ochrogaster lunifer (Lepidoptera, Notodontidae)

(2008) Paola Salvato et al.   BMC GENOMICS

Evolution of the mitochondrial genome of Metazoa as exemplified by comparison of congeneric species

(2008) C Gissi et al.   HEREDITY

Inverted Replication of Vertebrate Mitochondria

(2008) M. M. Fonseca et al.   MOLECULAR BIOLOGY AND EVOLUTION

Transcriptomic and genomic evolution under constant cold in Antarctic notothenioid fish

(2008) Z. Chen et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA