Rapid transcriptional and metabolic adaptation of intestinal microbes to host immune activation
出版年份 2021 全文链接
标题
Rapid transcriptional and metabolic adaptation of intestinal microbes to host immune activation
作者
关键词
microbiota, transcriptome, meta-transcriptome, immune responses, accute inflammation, stress, polysaccharide utilization loci, PUL, SCFA
出版物
Cell Host & Microbe
Volume 29, Issue 3, Pages 378-393.e5
出版商
Elsevier BV
发表日期
2021-02-06
DOI
10.1016/j.chom.2021.01.003
参考文献
相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。- Import of Aspartate and Malate by DcuABC Drives H2/Fumarate Respiration to Promote Initial Salmonella Gut-Lumen Colonization in Mice
- (2020) Bidong D. Nguyen et al. Cell Host & Microbe
- Dendritic cell–derived hepcidin sequesters iron from the microbiota to promote mucosal healing
- (2020) Nicholas J. Bessman et al. SCIENCE
- Faecal bacterial and short-chain fatty acids signature in hypercholesterolemia
- (2019) A. B. Granado-Serrano et al. Scientific Reports
- Oleate hydratase from Staphylococcusaureus protects against palmitoleic acid, the major antimicrobial fatty acid produced by mammalian skin
- (2019) Chitra Subramanian et al. JOURNAL OF BIOLOGICAL CHEMISTRY
- Multi-omics of the gut microbial ecosystem in inflammatory bowel diseases
- (2019) Jason Lloyd-Price et al. NATURE
- Exploring the emerging role of the microbiome in cancer immunotherapy
- (2019) Jessica Fessler et al. Journal for ImmunoTherapy of Cancer
- Ruminococcus gnavus, a member of the human gut microbiome associated with Crohn’s disease, produces an inflammatory polysaccharide
- (2019) Matthew T. Henke et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Complex Bacterial Consortia Reprogram the Colitogenic Activity of Enterococcus faecalis in a Gnotobiotic Mouse Model of Chronic, Immune-Mediated Colitis
- (2019) Isabella Lengfelder et al. Frontiers in Immunology
- Microbiota-derived lantibiotic restores resistance against vancomycin-resistant Enterococcus
- (2019) Sohn G. Kim et al. NATURE
- Molecular phenomics and metagenomics of hepatic steatosis in non-diabetic obese women
- (2018) Lesley Hoyles et al. NATURE MEDICINE
- Metabolic division of labor in microbial systems
- (2018) Ryan Tsoi et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Dynamics of metatranscription in the inflammatory bowel disease gut microbiome
- (2018) Melanie Schirmer et al. Nature Microbiology
- Inhibiting antibiotic-resistant Enterobacteriaceae by microbiota-mediated intracellular acidification
- (2018) Matthew T. Sorbara et al. JOURNAL OF EXPERIMENTAL MEDICINE
- Gut microbiome structure and metabolic activity in inflammatory bowel disease
- (2018) Eric A. Franzosa et al. Nature Microbiology
- Commensal microbes provide first line defense againstListeria monocytogenesinfection
- (2017) Simone Becattini et al. JOURNAL OF EXPERIMENTAL MEDICINE
- Defining the microbial transcriptional response to colitis through integrated host and microbiome profiling
- (2016) Nicholas Edward Ilott et al. ISME Journal
- Improvements to PATRIC, the all-bacterial Bioinformatics Database and Analysis Resource Center
- (2016) Alice R. Wattam et al. NUCLEIC ACIDS RESEARCH
- Gut Microbiota Profiling: Metabolomics Based Approach to Unravel Compounds Affecting Human Health
- (2016) Pamela Vernocchi et al. Frontiers in Microbiology
- Genome-guided design of a defined mouse microbiota that confers colonization resistance against Salmonella enterica serovar Typhimurium
- (2016) Sandrine Brugiroux et al. Nature Microbiology
- The deleterious metabolic and genotoxic effects of the bacterial metabolite p-cresol on colonic epithelial cells
- (2015) Mireille Andriamihaja et al. FREE RADICAL BIOLOGY AND MEDICINE
- Growth dynamics of gut microbiota in health and disease inferred from single metagenomic samples
- (2015) T. Korem et al. SCIENCE
- Surface-Associated Lipoproteins Link Enterococcus faecalis Virulence to Colitogenic Activity in IL-10-Deficient Mice Independent of Their Expression Levels
- (2015) Soeren Ocvirk et al. PLoS Pathogens
- RASTtk: A modular and extensible implementation of the RAST algorithm for building custom annotation pipelines and annotating batches of genomes
- (2015) Thomas Brettin et al. Scientific Reports
- Trimmomatic: a flexible trimmer for Illumina sequence data
- (2014) Anthony M. Bolger et al. BIOINFORMATICS
- Role of the Microbiota in Immunity and Inflammation
- (2014) Yasmine Belkaid et al. CELL
- Longitudinal study of murine microbiota activity and interactions with the host during acute inflammation and recovery
- (2014) Clarissa Schwab et al. ISME Journal
- Metabonomics of human fecal extracts characterize ulcerative colitis, Crohn’s disease and healthy individuals
- (2014) Jacob Tveiten Bjerrum et al. Metabolomics
- Precision microbiome reconstitution restores bile acid mediated resistance to Clostridium difficile
- (2014) Charlie G. Buffie et al. NATURE
- Rapid fucosylation of intestinal epithelium sustains host–commensal symbiosis in sickness
- (2014) Joseph M. Pickard et al. NATURE
- Relating the metatranscriptome and metagenome of the human gut
- (2014) E. A. Franzosa et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Unprecedented High-Resolution View of Bacterial Operon Architecture Revealed by RNA Sequencing
- (2014) T. Conway et al. mBio
- featureCounts: an efficient general purpose program for assigning sequence reads to genomic features
- (2013) Y. Liao et al. BIOINFORMATICS
- Analysis of Volatile Organic Compounds of Bacterial Origin in Chronic Gastrointestinal Diseases
- (2013) Christopher Walton et al. INFLAMMATORY BOWEL DISEASES
- Commensal microbe-derived butyrate induces the differentiation of colonic regulatory T cells
- (2013) Yukihiro Furusawa et al. NATURE
- Metabolites produced by commensal bacteria promote peripheral regulatory T-cell generation
- (2013) Nicholas Arpaia et al. NATURE
- Diet rapidly and reproducibly alters the human gut microbiome
- (2013) Lawrence A. David et al. NATURE
- Treg induction by a rationally selected mixture of Clostridia strains from the human microbiota
- (2013) Koji Atarashi et al. NATURE
- RefSeq microbial genomes database: new representation and annotation strategy
- (2013) Tatiana Tatusova et al. NUCLEIC ACIDS RESEARCH
- Computational analysis of bacterial RNA-Seq data
- (2013) Ryan McClure et al. NUCLEIC ACIDS RESEARCH
- The Microbial Metabolites, Short-Chain Fatty Acids, Regulate Colonic Treg Cell Homeostasis
- (2013) P. M. Smith et al. SCIENCE
- Expansion of intestinal Prevotella copri correlates with enhanced susceptibility to arthritis
- (2013) Jose U Scher et al. eLife
- Interleukin 23 Production by Intestinal CD103+CD11b+ Dendritic Cells in Response to Bacterial Flagellin Enhances Mucosal Innate Immune Defense
- (2012) Melissa A. Kinnebrew et al. IMMUNITY
- Suppression of Clostridium difficile in the Gastrointestinal Tracts of Germfree Mice Inoculated with a Murine Isolate from the Family Lachnospiraceae
- (2012) Angela E. Reeves et al. INFECTION AND IMMUNITY
- Fast gapped-read alignment with Bowtie 2
- (2012) Ben Langmead et al. NATURE METHODS
- clusterProfiler: an R Package for Comparing Biological Themes Among Gene Clusters
- (2012) Guangchuang Yu et al. OMICS-A JOURNAL OF INTEGRATIVE BIOLOGY
- The Black Queen Hypothesis: Evolution of Dependencies through Adaptive Gene Loss
- (2012) J. J. Morris et al. mBio
- Targeted Restoration of the Intestinal Microbiota with a Simple, Defined Bacteriotherapy Resolves Relapsing Clostridium difficile Disease in Mice
- (2012) Trevor D. Lawley et al. PLoS Pathogens
- Dysfunction of the intestinal microbiome in inflammatory bowel disease and treatment
- (2012) Xochitl C Morgan et al. GENOME BIOLOGY
- High-protein, reduced-carbohydrate weight-loss diets promote metabolite profiles likely to be detrimental to colonic health
- (2011) Wendy R Russell et al. AMERICAN JOURNAL OF CLINICAL NUTRITION
- Eating For Two: How Metabolism Establishes Interspecies Interactions in the Gut
- (2011) Michael A. Fischbach et al. Cell Host & Microbe
- Chronic Intestinal Inflammation Induces Stress-Response Genes in Commensal Escherichia coli
- (2011) Laura G. Patwa et al. GASTROENTEROLOGY
- Th17 Cells Express Interleukin-10 Receptor and Are Controlled by Foxp3− and Foxp3+ Regulatory CD4+ T Cells in an Interleukin-10-Dependent Manner
- (2011) Samuel Huber et al. IMMUNITY
- Control of TH17 cells occurs in the small intestine
- (2011) Enric Esplugues et al. NATURE
- Induction of Intestinal Th17 Cells by Segmented Filamentous Bacteria
- (2009) Ivaylo I. Ivanov et al. CELL
- Metabolomics Reveals Metabolic Biomarkers of Crohn's Disease
- (2009) Janet Jansson et al. PLoS One
Find Funding. Review Successful Grants.
Explore over 25,000 new funding opportunities and over 6,000,000 successful grants.
ExploreAsk a Question. Answer a Question.
Quickly pose questions to the entire community. Debate answers and get clarity on the most important issues facing researchers.
Get Started