Article
Biochemistry & Molecular Biology
Maksim A. Kalutsky, Timur R. Galimzyanov, Rodion J. Molotkovsky
Summary: This study investigates the fusion mechanism of monolayer and bilayer membranes during the interaction between lipid droplets and peroxisomes. Through energy trajectory and molecular dynamics simulation, it is found that the stalk formed during the fusion process is energetically more stable and has a lower energy barrier compared to bilayer fusion. The further evolution of the stalk is dependent on the spontaneous curvature of the membrane, possibly related to the incorporation of free fatty acids.
Article
Engineering, Environmental
Meili Yuan, Jingyuan Wang, Yixiang Li, Mingwen Zhao, Yong-Qiang Li, Weifeng Li, Yuanyuan Qu
Summary: This study demonstrates the potential of two recently reported metal-organic frameworks (MOF) membranes, NiIT and NiAT, as efficient desalination membranes. The desalination performance can be controlled by adjusting the membrane thickness. NiIT membrane shows excellent salt rejection and high water permeability, while NiAT membrane has improved water permeation and ion rejection. These MOF membranes have promising applications in energy-efficient desalination.
Article
Biology
Stephanie Bolik, Alexander Schlaich, Tetiana Mukhina, Alberto Amato, Olivier Bastien, Emanuel Schneck, Bruno Deme, Juliette Jouhet
Summary: The study compared the properties of betaine lipids and phosphatidylcholine (PC) lipids through neutron diffraction experiments and dynamic molecular simulations. It found that betaine lipids are thicker and more rigid than PC lipids, and they have higher repulsive forces, possibly due to unscreened electrostatic contribution. Furthermore, betaine lipids can exist in both gel and fluid phases.
Article
Chemistry, Multidisciplinary
Rashad Kariuki, Rowan Penman, Saffron J. Bryant, Rebecca Orrell-Trigg, Nastaran Meftahi, Russell J. Crawford, Chris F. McConville, Gary Bryant, Kislon Voitchovsky, Charlotte E. Conn, Andrew J. Christofferson, Aaron Elbourne
Summary: Nanomaterials have the potential to revolutionize biological and biomedical research, and this study provides detailed insights into how gold nanoparticles interact with phospholipid membranes. The study shows that the nanoparticles can be absorbed and internalized by fluid-phase membranes, and partially embed into gel-phase membranes, causing perturbations throughout the bilayers.
Article
Chemistry, Multidisciplinary
Yusuke Shimizu, Kohei Sato, Kazushi Kinbara
Summary: Inspired by natural calcium-induced reversible assembly and disassembly of membrane proteins, a phosphorylated amphiphile (PA) containing an oligo(phenylene-ethynylene) unit as a hydrophobic unit and a phosphate ester group as a hydrophilic calcium-binding unit was developed. The study demonstrated that PA can reversibly assemble and disassemble within lipid bilayer membranes in response to the sequential addition of calcium chloride and ethylene-diaminetetraacetic acid as a synthetic molecule for the first time.
CHEMICAL COMMUNICATIONS
(2021)
Article
Physics, Fluids & Plasmas
Mingyuan Ma, Christoph A. Haselwandter
Summary: The study presents a methodology for the self-assembly of lipids and Piezo proteins into polyhedral bilayer vesicles, validated with bacterial mechanosensitive channels. The radius of curvature of the Piezo dome is found to be a critical control parameter for the self-assembly of Piezo vesicles, with various symmetries observed as the radius increases.
Article
Chemistry, Physical
Elisa Aranda, Jose A. Teruel, Antonio Ortiz, Maria Dolores Perez-Carceles, Jose N. Rodriguez-Lopez, Francisco J. Aranda
Summary: The anticarcinogenic properties of catechins, their interaction with lipids, and their potential site of action in membranes were studied. Experimental and computational research showed that catechins can modify lipid polymorphism and membrane structure and dynamics. These findings provide insights into the molecular effects of catechins and their potential impact on membrane function.
JOURNAL OF MOLECULAR LIQUIDS
(2022)
Article
Oncology
Yashuang Yang, Guimei Li, Yanzhou Wang, Yan Sun, Chao Xu, Zhen Wei, Shuping Zhang, Ling Gao, Sijin Liu, Jiajun Zhao
Summary: This study revealed the phenomenon of red blood cell deformation in children with PWS, which may serve as an auxiliary indicator for early diagnosis of PWS.
FRONTIERS OF MEDICINE
(2022)
Article
Engineering, Mechanical
Choon-Peng Chng, Yoel Sadovsky, K. Jimmy Hsia, Changjin Huang
Summary: The peroxidation of lipids with polyunsaturated fatty acid tails modulates the biophysical properties of bilayer membrane in a site-specific manner, influencing membrane structure and properties. Specifically, peroxidation at different sites leads to distinct changes in the membrane, with peroxidation in the bilayer interior causing membrane disruption and softening, while peroxidation near the membrane-water interface results in a more ordered and stiffer membrane.
EXTREME MECHANICS LETTERS
(2021)
Article
Multidisciplinary Sciences
Fabian C. Herbert, Sameera S. Abeyrathna, Nisansala S. Abeyrathna, Yalini H. Wijesundara, Olivia R. Brohlin, Francesco Carraro, Heinz Amenitsch, Paolo Falcaro, Michael A. Luzuriaga, Alejandra Durand-Silva, Shashini D. Diwakara, Ronald A. Smaldone, Gabriele Meloni, Jeremiah J. Gassensmith
Summary: This study demonstrates the successful generation and immobilization of metastable lipid, protein-detergent, and protein-lipid supramolecular complexes within a zeolitic-imidazole framework (ZIF) to enhance stability against various stressors. The immobilized complexes exhibit resistance to elevated temperatures, chemical denaturants, aging, and mechanical stresses, maintaining their native morphology, structure, and activity. Immobilizing lipid nanoparticles and lipid-protein assemblies remains challenging due to lipid dynamics and protein instability, but this work shows promise for long-term storage at room temperature.
NATURE COMMUNICATIONS
(2021)
Article
Biochemistry & Molecular Biology
Damian Dziubak, Slawomir Sek
Summary: Many biochemical processes occur in cell membranes, with proteins playing a key role. Understanding the function of these proteins within the membrane is still challenging, but biomimetic models can help. However, maintaining the native protein structure in such models is problematic. Bicelles offer a potential solution, as they can integrate with transmembrane proteins while preserving their structure.
BIOELECTROCHEMISTRY
(2023)
Article
Chemistry, Multidisciplinary
Florian Mahler, Annette Meister, Carolyn Vargas, Gregory Durand, Sandro Keller
Summary: The use of specific amphiphilic molecules can directly assemble lipids and membrane proteins to form native nanodiscs, rather than mixed micelles. Detailed investigation into the lipid bilayer integrity and membrane protein activity in these nanodiscs reveals gentle effects.
Article
Biochemistry & Molecular Biology
James C. S. Ho, Sartaj Ahmad Mir, Michele Cavalera, Parisa Esmaeili, Tuan Hiep Tran, Zandra Chew Yann, Thi Hien Tran, Arunima Chaudhuri, Anne K. Bendt, Markus R. Wenk, Catharina Svanborg
Summary: This study found that bladder cancer tissue has a higher abundance of unsaturated lipids, which can enhance the tumor cell response to alpha1-oleate, compared to healthy tissue. This highlights the functional importance of membrane lipid composition in tumor cell reactivity.
Article
Engineering, Environmental
Yiping Feng, Jiayong Lao, Jiale Zou, Zhiyu Zhu, Daguang Li, Guoguang Liu, Liang Mao
Summary: Understanding the interactions between nanomaterials and cell membranes is important for ecotoxicology and human health. In this study, the interaction between graphitic carbon nitride (CN) and red blood cells was investigated. It was found that CN causes rapid cell membrane rupture through a physical interaction mechanism rather than chemical oxidation. Additionally, CN was found to extract phospholipids, particularly phosphatidylcholine, from cell membranes.
ENVIRONMENTAL SCIENCE & TECHNOLOGY
(2022)
Article
Chemistry, Physical
Ningning Xuan, Aozhen Xie, Bing Liu, Zhengzong Sun
Summary: Bilayer graphene (BLG) has attracted significant research interest for its tunable physical properties dependent on twisted angles and interlayer interaction. This article focuses on the study of BLG single crystals with representative twisted angles of approximately 0 degrees and approximately 30 degrees, grown by chemical vapor deposition (CVD). The surface potentials of pristine BLG single crystals indicate that the surface potential difference between single layer graphene (SLG) and BLG is lower for approximately 0 degrees compared to approximately 30 degrees. Additionally, reversible tuning of the electrical coupling and properties of BLG is achieved through diazonium salts reaction and nitrogen doping, resulting in a wide range of surface potential tuning from 0 to 50 mV.
Review
Biochemistry & Molecular Biology
Tamir Dingjan, Ian Spendlove, Lindy G. Durrant, Andrew M. Scott, Elizabeth Yuriev, Paul A. Ramsland
MOLECULAR IMMUNOLOGY
(2015)
Article
Biochemistry & Molecular Biology
Jeffrey Seow, Rodrigo A. V. Morales, Christopher A. MacRaild, Bankala Krishnarjuna, Sheena McGowan, Tamir Dingjan, Garima Jaipuria, Romain Rouet, Karyn L. Wilde, Hanudatta S. Atreya, Jack S. Richards, Robin F. Anders, Daniel Christ, Nyssa Drinkwater, Raymond S. Norton
JOURNAL OF MOLECULAR BIOLOGY
(2017)
Article
Pharmacology & Pharmacy
Tamir Dingjan, Anne Imberty, Serge Perez, Elizabeth Yuriev, Paul A. Ramsland
FRONTIERS IN PHARMACOLOGY
(2017)
Article
Biochemistry & Molecular Biology
Mark Agostino, Tony Velkov, Tamir Dingjan, Spencer J. Williams, Elizabeth Yuriev, Paul A. Ramsland
Article
Chemistry, Medicinal
Tamir Dingjan, Emilie Gillon, Anne Imberty, Serge Perez, Alexander Titz, Paul A. Ramsland, Elizabeth Yuriev
JOURNAL OF CHEMICAL INFORMATION AND MODELING
(2018)
Article
Chemistry, Medicinal
Lian Xue, Da-Hua Shi, Jitendra R. Harjani, Fei Huang, Julia G. Beveridge, Tamir Dingjan, Kung Ban, Sarah Diab, Sandra Duffy, Leonardo Lucantoni, Sabine Fletcher, Francis C. K. Chiu, Scott Blundell, Katherine Ellis, Stuart A. Ralph, Grennady Wirjanata, Silvia Teguh, Rintis Noviyanti, Marina Chavchich, Darren Creek, Ric N. Price, Jutta Marfurt, Susan A. Charman, Matthew E. Cuellar, Jessica M. Strasser, Jayme L. Dahlin, Michael A. Walters, Michael D. Edstein, Vicky M. Avery, Jonathan B. Baell
JOURNAL OF MEDICINAL CHEMISTRY
(2019)
Article
Agriculture, Multidisciplinary
Verena Stoeger, Ann-Katrin Holik, Kathrin Hoelz, Tamir Dingjan, Joachim Hans, Jakob P. Ley, Gerhard E. Krammer, Masha Y. Niv, Mark Manuel Somoza, Veronika Somoza
JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY
(2020)
Article
Plant Sciences
Jonathan D. Muller, Eyal Rotenberg, Fyodor Tatarinov, Irina Vishnevetsky, Tamir Dingjan, Abraham Kribus, Dan Yakir
Summary: Temperature is a key factor in biological activities and a novel 'dual-reference' method has been developed to increase the accuracy of infrared needle-leaf surface temperature measurements in the field, providing an ideal solution for high-precision leaf temperature measurements even under harsh field conditions.
Article
Biochemistry & Molecular Biology
Tamir Dingjan, Anthony H. Futerman
Summary: This article discusses the unique properties of the sphingoid motif in sphingolipids and how this structural motif drives intra-bilayer interactions. Additionally, it outlines the atomic details of interactions with key players in the biosynthetic pathway.
BIOCHIMICA ET BIOPHYSICA ACTA-BIOMEMBRANES
(2021)
Article
Neurosciences
Shani Blumenreich, Tamar Nehushtan, Or B. Barav, Jennifer T. Saville, Tamir Dingjan, John Hardy, Maria Fuller, Anthony H. Futerman
Summary: In the past decade, several genetic risk factors, including GBA variants, have been identified for Parkinson's Disease (PD). This study analyzes lipid levels in different brain regions of PD patients with GBA mutations and suggests that changes in ganglioside levels may contribute to the association between PD and GBA mutations.
NPJ PARKINSONS DISEASE
(2022)
Article
Multidisciplinary Sciences
Iris D. D. Zelnik, Beatriz Mestre, Jonathan J. J. Weinstein, Tamir Dingjan, Stav Izrailov, Shifra Ben-Dor, Sarel J. J. Fleishman, Anthony H. H. Futerman
Summary: Researchers validate a one-step algorithm called mPROSS for stabilizing membrane proteins directly from an AlphaFold2 model structure. By applying this algorithm to ceramide synthase, they obtained a more stable form of human CerS2 enzyme through 37 designed mutations. With the help of molecular dynamics simulations, a potential pathway for substrate delivery to ceramide synthases is proposed.
NATURE COMMUNICATIONS
(2023)
Article
Medicine, Research & Experimental
Aviyah Peri, Erez Greenstein, Michal Alon, Joy A. Pai, Tamir Dingjan, Shlomit Reich-Zeliger, Eilon Barnea, Chaya Barbolin, Ronen Levy, Claudia Arnedo-Pac, Shelly Kalaora, Bareket Dassa, Ester Feldmesser, Ping Shang, Polina Greenberg, Yishai Levin, Gil Benedek, Mitchell P. Levesque, David J. Adams, Michal Lotem, James S. Wilmott, Richard A. Scolyer, Goeran B. Joensson, Arie Admon, Steven A. Rosenberg, Cyrille J. Cohen, Masha Y. Niv, Nuria Lopez-Bigas, Ansuman T. Satpathy, Nir Friedman, Yardena Samuels
Summary: The study identified an immunogenic neoantigen applicable to 3% of melanoma patients, showing its endogenous presentation and natural immunogenicity. Analysis further revealed the diversity of neoantigen-specific clones and their response and phenotypic characteristics in combating melanoma.
JOURNAL OF CLINICAL INVESTIGATION
(2021)